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The map label for this gene is licD [H]

Identifier: 150008456

GI number: 150008456

Start: 2192443

End: 2193351

Strand: Reverse

Name: licD [H]

Synonym: BDI_1840

Alternate gene names: 150008456

Gene position: 2193351-2192443 (Counterclockwise)

Preceding gene: 150008457

Following gene: 150008455

Centisome position: 45.59

GC content: 34.54

Gene sequence:

>909_bases
ATGAAATCTGATAGTGAATTGATGAATGAGTTAGCTCATAAAACGAATTATTTACATGAGATGACATCTTCGGAGTCTTC
TGCCATGAAGCGAGCTTTGTTGGATATATACAGGGATGTAGCGAAATTATGTGAAAAAGAAGGCTTGACATTAATGCTCA
GTGGTGGAAGTTGTTTGGGAGCAGTCCGACATAAAGGTTTTATACCTTGGGATGATGATTTAGACGTAATGATGAGACGT
GATGATTATGAAAGATTGATTCGATTGTGTAAGGAGGGGAGGTTAGGTGATAAATATGAGTTTGACTATCCTAATAAGGA
TGCTGATGCGAAAACAGTATTCTTGAAGATATATAGAAAGAACTCCTTTAATATAGAACTTTTCAATGAAAACTCTCCCT
TCCCTAAAGGTTTATATATTGATGTATTTGCTTTAGATTCAGTACCTCAGTCTAAGTTCATGCAAGCCATGAAAGGTTTT
GTTGCCAATGTAATCCAGTTTATATCCATTATGGTTTTGTATGCGCAGTATCCTAGTAAGTCTTTGTCTGAATTTGTATC
TCTAGATTCATCGTTAAAGAGAAGATATCAGATTAAGAAAATCATGGGATCTTTCTTCGGAATTATTCCACATGCAAAAT
GGGTTTATTGGTTTGATCGTTTTGTGGCTTCTTCAAAGAATGGTAACCCTCTAGGTATTCCTACTGGTAGAAAATATTAT
AATGGAGAAATATTTGATGCTTCTGTATATTTTCCTCCAAAAGAGGCTTTGTTTGAAGGAGAAATCGTTTATATACCTGC
TGACTATGATCGGTATTTGACAAATCTTTATCATGATTATATGCAATTGCCTCCAGTAGAAAAAAGAGAGAGGCATTTTA
TTTTGAAGTTTCAATTGCCTAATGATTGA

Upstream 100 bases:

>100_bases
ATACCTTGTTGAAATCAAGTGTTGTTGCGTCTGTGTCGGTGAATACTATATTTTCTTCCCTGACCGGAGAAGTGGTGGAT
GTTAAAAAAAGACCGTAAAG

Downstream 100 bases:

>100_bases
AGCATAGAAAATTTTTGTATTCTATTATTTAGAATGAAAAACAAGCTATTTAGCGTACTTATTTCTGTTTATAAGAACGA
TAACCCTGATGATTTTAGAA

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKSDSELMNELAHKTNYLHEMTSSESSAMKRALLDIYRDVAKLCEKEGLTLMLSGGSCLGAVRHKGFIPWDDDLDVMMRR
DDYERLIRLCKEGRLGDKYEFDYPNKDADAKTVFLKIYRKNSFNIELFNENSPFPKGLYIDVFALDSVPQSKFMQAMKGF
VANVIQFISIMVLYAQYPSKSLSEFVSLDSSLKRRYQIKKIMGSFFGIIPHAKWVYWFDRFVASSKNGNPLGIPTGRKYY
NGEIFDASVYFPPKEALFEGEIVYIPADYDRYLTNLYHDYMQLPPVEKRERHFILKFQLPND

Sequences:

>Translated_302_residues
MKSDSELMNELAHKTNYLHEMTSSESSAMKRALLDIYRDVAKLCEKEGLTLMLSGGSCLGAVRHKGFIPWDDDLDVMMRR
DDYERLIRLCKEGRLGDKYEFDYPNKDADAKTVFLKIYRKNSFNIELFNENSPFPKGLYIDVFALDSVPQSKFMQAMKGF
VANVIQFISIMVLYAQYPSKSLSEFVSLDSSLKRRYQIKKIMGSFFGIIPHAKWVYWFDRFVASSKNGNPLGIPTGRKYY
NGEIFDASVYFPPKEALFEGEIVYIPADYDRYLTNLYHDYMQLPPVEKRERHFILKFQLPND
>Mature_302_residues
MKSDSELMNELAHKTNYLHEMTSSESSAMKRALLDIYRDVAKLCEKEGLTLMLSGGSCLGAVRHKGFIPWDDDLDVMMRR
DDYERLIRLCKEGRLGDKYEFDYPNKDADAKTVFLKIYRKNSFNIELFNENSPFPKGLYIDVFALDSVPQSKFMQAMKGF
VANVIQFISIMVLYAQYPSKSLSEFVSLDSSLKRRYQIKKIMGSFFGIIPHAKWVYWFDRFVASSKNGNPLGIPTGRKYY
NGEIFDASVYFPPKEALFEGEIVYIPADYDRYLTNLYHDYMQLPPVEKRERHFILKFQLPND

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 35189; Mature: 35189

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSDSELMNELAHKTNYLHEMTSSESSAMKRALLDIYRDVAKLCEKEGLTLMLSGGSCLG
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
AVRHKGFIPWDDDLDVMMRRDDYERLIRLCKEGRLGDKYEFDYPNKDADAKTVFLKIYRK
HHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCHHEEEEEEEEC
NSFNIELFNENSPFPKGLYIDVFALDSVPQSKFMQAMKGFVANVIQFISIMVLYAQYPSK
CCCEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SLSEFVSLDSSLKRRYQIKKIMGSFFGIIPHAKWVYWFDRFVASSKNGNPLGIPTGRKYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
NGEIFDASVYFPPKEALFEGEIVYIPADYDRYLTNLYHDYMQLPPVEKRERHFILKFQLP
CCEEEEEEEECCCHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
ND
CC
>Mature Secondary Structure
MKSDSELMNELAHKTNYLHEMTSSESSAMKRALLDIYRDVAKLCEKEGLTLMLSGGSCLG
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
AVRHKGFIPWDDDLDVMMRRDDYERLIRLCKEGRLGDKYEFDYPNKDADAKTVFLKIYRK
HHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCHHEEEEEEEEC
NSFNIELFNENSPFPKGLYIDVFALDSVPQSKFMQAMKGFVANVIQFISIMVLYAQYPSK
CCCEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SLSEFVSLDSSLKRRYQIKKIMGSFFGIIPHAKWVYWFDRFVASSKNGNPLGIPTGRKYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
NGEIFDASVYFPPKEALFEGEIVYIPADYDRYLTNLYHDYMQLPPVEKRERHFILKFQLP
CCEEEEEEEECCCHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
ND
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]