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The map label for this gene is rhaS [C]

Identifier: 150008196

GI number: 150008196

Start: 1827058

End: 1827927

Strand: Direct

Name: rhaS [C]

Synonym: BDI_1562

Alternate gene names: 150008196

Gene position: 1827058-1827927 (Clockwise)

Preceding gene: 150008194

Following gene: 150008198

Centisome position: 37.97

GC content: 39.89

Gene sequence:

>870_bases
ATGGAAAAGGAAATGCTCACATTCGATATCACGAACGATTTTATCGTCGGAGATCGTATCACAAAAGAGACGCTAAACAA
ATACAGCAAGCTGCCTCATAAGATAAAGGCAGGTTTGTTTCTCCTTTGTGTAGAAGGTTCCGTGCAGGCTTCTATCAATC
TAGCGAAGTATACGATTAACAAATATGATTTCGTGACCTTAGTGCCCAGCAATTTTATCCAGTTTCATGAAATATCGGAC
GACGCACGTTTCTATTTCGCCGGATTCTCTTCGGAGTTTATGACAAACATCAATTTTATTAAATCAACCATGAGCTTTCT
TCCCGTTATCACGGAACATCCGATCATGCCGCTGGAAGAATCTGTAGCTCAATTATATATTGACGGATACCGTTTATTGA
TACGTGCGCAATCCTTATCCCCGTCTTATTCTATGGTAAATAAAAACCTAGTCATCGCTTATCTCACGATATTCATGCAA
GGAACGGCTGAGTTATATAAAAATCATAGCCATTGGACAAATGGAATCCGTACGCGCACCAATGAGATTTACCGTAAGTT
TATCCAACTTGTCGTAGAGCATTATACCACCGAGCACAGCGTTTCTTTTTACGCCGCTCAATTAAATTTGTCGTTACCTC
ATTTCTGCACGACTATTAAGAAAGCGATCGGACTTACTCCTTTGGAAATCATCTCCTCCATTATCACGATGGATGCCAAG
GCACAATTAAGATCAACAGACTTAACCGTAAAAGAGATCGCTTTCTCTTTAGGCTTTAACAACCTGTCTTTTTTCAACAA
ATATTTCAGGCAGCATACGGGAATGACACCTCAAGAATATAGAAGAATGAAAATTCCCTCAAGCACGTAG

Upstream 100 bases:

>100_bases
GGAATCAATATCCATTCTTTCGTTTCTATGTTCTATTTTTATTATCTTGAATAATAAGTATTTATTAATTCCTATATTTG
AGACGAATTACCGATTAGAT

Downstream 100 bases:

>100_bases
CCAGCAATCACTTCTTTAGTAAAACCATACCATCGATATCGGGCATCCATGAGCTCCATCCCATCGTGGGAGGATCATAC
GCAAAAACAGAAGATGCCAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Transcriptional Regulator AraC Family; Transcription Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; AraC-Type Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Phosphomethylpyrimidine Kinase

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MEKEMLTFDITNDFIVGDRITKETLNKYSKLPHKIKAGLFLLCVEGSVQASINLAKYTINKYDFVTLVPSNFIQFHEISD
DARFYFAGFSSEFMTNINFIKSTMSFLPVITEHPIMPLEESVAQLYIDGYRLLIRAQSLSPSYSMVNKNLVIAYLTIFMQ
GTAELYKNHSHWTNGIRTRTNEIYRKFIQLVVEHYTTEHSVSFYAAQLNLSLPHFCTTIKKAIGLTPLEIISSIITMDAK
AQLRSTDLTVKEIAFSLGFNNLSFFNKYFRQHTGMTPQEYRRMKIPSST

Sequences:

>Translated_289_residues
MEKEMLTFDITNDFIVGDRITKETLNKYSKLPHKIKAGLFLLCVEGSVQASINLAKYTINKYDFVTLVPSNFIQFHEISD
DARFYFAGFSSEFMTNINFIKSTMSFLPVITEHPIMPLEESVAQLYIDGYRLLIRAQSLSPSYSMVNKNLVIAYLTIFMQ
GTAELYKNHSHWTNGIRTRTNEIYRKFIQLVVEHYTTEHSVSFYAAQLNLSLPHFCTTIKKAIGLTPLEIISSIITMDAK
AQLRSTDLTVKEIAFSLGFNNLSFFNKYFRQHTGMTPQEYRRMKIPSST
>Mature_289_residues
MEKEMLTFDITNDFIVGDRITKETLNKYSKLPHKIKAGLFLLCVEGSVQASINLAKYTINKYDFVTLVPSNFIQFHEISD
DARFYFAGFSSEFMTNINFIKSTMSFLPVITEHPIMPLEESVAQLYIDGYRLLIRAQSLSPSYSMVNKNLVIAYLTIFMQ
GTAELYKNHSHWTNGIRTRTNEIYRKFIQLVVEHYTTEHSVSFYAAQLNLSLPHFCTTIKKAIGLTPLEIISSIITMDAK
AQLRSTDLTVKEIAFSLGFNNLSFFNKYFRQHTGMTPQEYRRMKIPSST

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33278; Mature: 33278

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKEMLTFDITNDFIVGDRITKETLNKYSKLPHKIKAGLFLLCVEGSVQASINLAKYTIN
CCCCEEEEECCCCEEECCHHHHHHHHHHHHCCHHHCCCEEEEEECCCCEEEEEEEEEEEC
KYDFVTLVPSNFIQFHEISDDARFYFAGFSSEFMTNINFIKSTMSFLPVITEHPIMPLEE
CEEEEEECCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
SVAQLYIDGYRLLIRAQSLSPSYSMVNKNLVIAYLTIFMQGTAELYKNHSHWTNGIRTRT
HHHHHHHCCEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHH
NEIYRKFIQLVVEHYTTEHSVSFYAAQLNLSLPHFCTTIKKAIGLTPLEIISSIITMDAK
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCH
AQLRSTDLTVKEIAFSLGFNNLSFFNKYFRQHTGMTPQEYRRMKIPSST
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MEKEMLTFDITNDFIVGDRITKETLNKYSKLPHKIKAGLFLLCVEGSVQASINLAKYTIN
CCCCEEEEECCCCEEECCHHHHHHHHHHHHCCHHHCCCEEEEEECCCCEEEEEEEEEEEC
KYDFVTLVPSNFIQFHEISDDARFYFAGFSSEFMTNINFIKSTMSFLPVITEHPIMPLEE
CEEEEEECCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
SVAQLYIDGYRLLIRAQSLSPSYSMVNKNLVIAYLTIFMQGTAELYKNHSHWTNGIRTRT
HHHHHHHCCEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHH
NEIYRKFIQLVVEHYTTEHSVSFYAAQLNLSLPHFCTTIKKAIGLTPLEIISSIITMDAK
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCH
AQLRSTDLTVKEIAFSLGFNNLSFFNKYFRQHTGMTPQEYRRMKIPSST
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA