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The map label for this gene is ygcF [C]

Identifier: 150007939

GI number: 150007939

Start: 1509606

End: 1510151

Strand: Direct

Name: ygcF [C]

Synonym: BDI_1300

Alternate gene names: 150007939

Gene position: 1509606-1510151 (Clockwise)

Preceding gene: 150007938

Following gene: 150007942

Centisome position: 31.38

GC content: 56.04

Gene sequence:

>546_bases
ATGAGGAAGATTAACGAGATATTCTACAGCTTGCAAGGCGAAGGGTTCCATACGGGGACTCCCGCCGTATTCGTCCGCTT
CTCCGGTTGCAACCTGAGATGTGGCTTCTGCGACACCCGCCACGAGGAGGGCGTGATGATGACGGACGAGGAGATCGTGG
AGAAGGTATCTTCCTTTCCCGCACGGATGGTGATCCTGACGGGAGGAGAACCTAGCCTCTGGATCGACAAGTCGCTCATA
TCCCGCTTGCGTGAGGCGGGGAAACAGGTCTGTATCGAGACCAACGGCACACGCCCCCTGCCCGACGGCATCGACTGGGT
GACTTGCTCGCCCAAGGAGAACGCCCCGGTGGTATTGGAAAGAGTCGACGAGATAAAGGTGGTTTATACCGGGCAAGACC
TGTCCGCATACGCCGAAATCCCCGCACGGTACCATTTCCTGCAACCCTGCTCCTGCCAAAATACGAAAGAGGTAGTGGAT
TACATCCTCCGGCATCCCCGGTGGAGACTAAGTCTGCAAACCCATAAACTGATCGATATCCAATAG

Upstream 100 bases:

>100_bases
TTCAACCCGACGGCGGAGAACATAGCCTTTTGGGTATACGAGCAGATCCCGTCTTGTTTCAAGGTAGAGGTAAAAGAGTC
TGAGGGTAATACGGCGATCT

Downstream 100 bases:

>100_bases
ATAGGATGAGACGGGGGCATGCCCCGTCTCTACTGCTATAGATAACGGACTTCTTTACCTCTCACGGCGTCATTCACCTC
TCCATCGCCATAGGCCAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNLRCGFCDTRHEEGVMMTDEEIVEKVSSFPARMVILTGGEPSLWIDKSLI
SRLREAGKQVCIETNGTRPLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLSAYAEIPARYHFLQPCSCQNTKEVVD
YILRHPRWRLSLQTHKLIDIQ

Sequences:

>Translated_181_residues
MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNLRCGFCDTRHEEGVMMTDEEIVEKVSSFPARMVILTGGEPSLWIDKSLI
SRLREAGKQVCIETNGTRPLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLSAYAEIPARYHFLQPCSCQNTKEVVD
YILRHPRWRLSLQTHKLIDIQ
>Mature_181_residues
MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNLRCGFCDTRHEEGVMMTDEEIVEKVSSFPARMVILTGGEPSLWIDKSLI
SRLREAGKQVCIETNGTRPLPDGIDWVTCSPKENAPVVLERVDEIKVVYTGQDLSAYAEIPARYHFLQPCSCQNTKEVVD
YILRHPRWRLSLQTHKLIDIQ

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 20617; Mature: 20617

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNLRCGFCDTRHEEGVMMTDEEIVEKVSSFP
CCHHHHHHHHHCCCCEECCCCEEEEEECCCEEEECCCCCCCCCCEEECCHHHHHHHHCCC
ARMVILTGGEPSLWIDKSLISRLREAGKQVCIETNGTRPLPDGIDWVTCSPKENAPVVLE
EEEEEEECCCCCEEECHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHEE
RVDEIKVVYTGQDLSAYAEIPARYHFLQPCSCQNTKEVVDYILRHPRWRLSLQTHKLIDI
ECCEEEEEEECCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCEEEEC
Q
C
>Mature Secondary Structure
MRKINEIFYSLQGEGFHTGTPAVFVRFSGCNLRCGFCDTRHEEGVMMTDEEIVEKVSSFP
CCHHHHHHHHHCCCCEECCCCEEEEEECCCEEEECCCCCCCCCCEEECCHHHHHHHHCCC
ARMVILTGGEPSLWIDKSLISRLREAGKQVCIETNGTRPLPDGIDWVTCSPKENAPVVLE
EEEEEEECCCCCEEECHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHEE
RVDEIKVVYTGQDLSAYAEIPARYHFLQPCSCQNTKEVVDYILRHPRWRLSLQTHKLIDI
ECCEEEEEEECCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCEEEEC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]