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The map label for this gene is ykgA [H]

Identifier: 150007888

GI number: 150007888

Start: 1447464

End: 1448081

Strand: Reverse

Name: ykgA [H]

Synonym: BDI_1248

Alternate gene names: 150007888

Gene position: 1448081-1447464 (Counterclockwise)

Preceding gene: 150007891

Following gene: 150007887

Centisome position: 30.1

GC content: 40.45

Gene sequence:

>618_bases
ATGAAGCCTGATACGGAAAACATATATCAACGGAAAATCAATCAAGTAATTGATTATATCAATGCGAATTTGCATCTCCC
TTTACGACTGGATATAATAGCCGGGCAAGTAAACGTGTCCGAGCGGCAGCTACTACGTATTATGAAAGGAGCCTTGAATG
AGTCATTATATGCTTATGTGGCGAGGCAACGTGTAGAGCGAGCGGTTCTATATATGCATACGGAAGATATGAGTCTGGCA
GATCTAGCGAGTCGGGTAGGCTATGATAACCCCCAATCTTTCTCGAAAGCGTTCAAGAAACAATTCAGCGTATCTCCGAA
AGCTTATATGGATAAGTTGCGAGCACGTCTGAGAGAAGAGACCGAGAAGTGGAGTAATGCTTCGGTCGGGAAGGAGATTA
TTCCATCAGGGATGTTCGGTACGATTCGTTTGCAGAAAGGAAAATATGCGGTTTATACCTTAAAAGGTAGTTATGCGGGA
TTACAAGAACTATATAATACTATAAATATAGATTTCAATTATACCAAACGGCATGGAATGGCGTTTGAGGAATATGTGAG
TTATTCGGAAGAGGATGACGATACCCAAGTGACAAAGATTTATATACCAATAAAATAA

Upstream 100 bases:

>100_bases
TGGCTTTTAAACAAATATAGGGGAAATCTCAAATTGGCGAGATTGGACAATTGTCAGTCTGTTGGGATTATGTATTTTTG
TCATCATAAGAATCTATAGG

Downstream 100 bases:

>100_bases
ATTAGTATGGAAACAAAATTTTGCCAAAGCTGCGGTATGCCGCTGCAAAAGAATGAGGAGTTAGGAACGAACCATGACGG
AAGCAAGAATGAGGAATATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKPDTENIYQRKINQVIDYINANLHLPLRLDIIAGQVNVSERQLLRIMKGALNESLYAYVARQRVERAVLYMHTEDMSLA
DLASRVGYDNPQSFSKAFKKQFSVSPKAYMDKLRARLREETEKWSNASVGKEIIPSGMFGTIRLQKGKYAVYTLKGSYAG
LQELYNTINIDFNYTKRHGMAFEEYVSYSEEDDDTQVTKIYIPIK

Sequences:

>Translated_205_residues
MKPDTENIYQRKINQVIDYINANLHLPLRLDIIAGQVNVSERQLLRIMKGALNESLYAYVARQRVERAVLYMHTEDMSLA
DLASRVGYDNPQSFSKAFKKQFSVSPKAYMDKLRARLREETEKWSNASVGKEIIPSGMFGTIRLQKGKYAVYTLKGSYAG
LQELYNTINIDFNYTKRHGMAFEEYVSYSEEDDDTQVTKIYIPIK
>Mature_205_residues
MKPDTENIYQRKINQVIDYINANLHLPLRLDIIAGQVNVSERQLLRIMKGALNESLYAYVARQRVERAVLYMHTEDMSLA
DLASRVGYDNPQSFSKAFKKQFSVSPKAYMDKLRARLREETEKWSNASVGKEIIPSGMFGTIRLQKGKYAVYTLKGSYAG
LQELYNTINIDFNYTKRHGMAFEEYVSYSEEDDDTQVTKIYIPIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=105, Percent_Identity=27.6190476190476, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 23715; Mature: 23715

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPDTENIYQRKINQVIDYINANLHLPLRLDIIAGQVNVSERQLLRIMKGALNESLYAYV
CCCCHHHHHHHHHHHHHHHHCCCEECEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ARQRVERAVLYMHTEDMSLADLASRVGYDNPQSFSKAFKKQFSVSPKAYMDKLRARLREE
HHHHHHHHHHEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
TEKWSNASVGKEIIPSGMFGTIRLQKGKYAVYTLKGSYAGLQELYNTINIDFNYTKRHGM
HHHHCCCCCCHHHCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHCCCCEEEHHHCCC
AFEEYVSYSEEDDDTQVTKIYIPIK
CHHHHHCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKPDTENIYQRKINQVIDYINANLHLPLRLDIIAGQVNVSERQLLRIMKGALNESLYAYV
CCCCHHHHHHHHHHHHHHHHCCCEECEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ARQRVERAVLYMHTEDMSLADLASRVGYDNPQSFSKAFKKQFSVSPKAYMDKLRARLREE
HHHHHHHHHHEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
TEKWSNASVGKEIIPSGMFGTIRLQKGKYAVYTLKGSYAGLQELYNTINIDFNYTKRHGM
HHHHCCCCCCHHHCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHCCCCEEEHHHCCC
AFEEYVSYSEEDDDTQVTKIYIPIK
CHHHHHCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]