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The map label for this gene is rbpD [H]

Identifier: 150007850

GI number: 150007850

Start: 1405574

End: 1405819

Strand: Reverse

Name: rbpD [H]

Synonym: BDI_1210

Alternate gene names: 150007850

Gene position: 1405819-1405574 (Counterclockwise)

Preceding gene: 150007857

Following gene: 150007849

Centisome position: 29.22

GC content: 41.87

Gene sequence:

>246_bases
ATGAATATTTACATTGGAAACCTGAATTATCGGGTAAGAGAATCAGACTTACAACAGATTCTGGAAGAGTATGGTGTTGT
AGACTCAGTTAAAATCATTGTTGACCGTGACACAAAACGTTCTAAGGGCTTCGCTTTCGCTGAGATGCCTAACGCTGCAG
AGGCTCAAAAAGCTATCGAGGAGTTGAACCAAGCTGAGTACGAAGGTCGTCAGATGGTTGTTAAAGAAGCTATCCCTAGA
CGTTAA

Upstream 100 bases:

>100_bases
GCATTTATTCATCAGCGATGATAATACTTTCTTTTAGAGATTGACTTCACCAACCATCCTTGTTTTATTATTAATTTTTA
TTTTTTTATATCATTTTCGT

Downstream 100 bases:

>100_bases
ATTTTAGAAGAAAGAGATTTTTAAAATAAGACGAAAAAGCGGGGAAACGAGGTGAAAACTTCCGTTTCCCCGCTTTCTTT
TTTCAGTGTATTTTGTTTAT

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MNIYIGNLNYRVRESDLQQILEEYGVVDSVKIIVDRDTKRSKGFAFAEMPNAAEAQKAIEELNQAEYEGRQMVVKEAIPR
R

Sequences:

>Translated_81_residues
MNIYIGNLNYRVRESDLQQILEEYGVVDSVKIIVDRDTKRSKGFAFAEMPNAAEAQKAIEELNQAEYEGRQMVVKEAIPR
R
>Mature_81_residues
MNIYIGNLNYRVRESDLQQILEEYGVVDSVKIIVDRDTKRSKGFAFAEMPNAAEAQKAIEELNQAEYEGRQMVVKEAIPR
R

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI35493811, Length=80, Percent_Identity=36.25, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI4757926, Length=80, Percent_Identity=36.25, Blast_Score=66, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=36.25, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=37.6623376623377, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=40, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=40, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=40, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=40, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=40, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=40, Blast_Score=68, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=40, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9348; Mature: 9348

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIYIGNLNYRVRESDLQQILEEYGVVDSVKIIVDRDTKRSKGFAFAEMPNAAEAQKAIE
CEEEECCCCEEECHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCHHHHHHHHH
ELNQAEYEGRQMVVKEAIPRR
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNIYIGNLNYRVRESDLQQILEEYGVVDSVKIIVDRDTKRSKGFAFAEMPNAAEAQKAIE
CEEEECCCCEEECHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCHHHHHHHHH
ELNQAEYEGRQMVVKEAIPRR
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]