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The map label for this gene is rpoE [C]

Identifier: 150007802

GI number: 150007802

Start: 1347214

End: 1347816

Strand: Reverse

Name: rpoE [C]

Synonym: BDI_1160

Alternate gene names: 150007802

Gene position: 1347816-1347214 (Counterclockwise)

Preceding gene: 150007803

Following gene: 150007801

Centisome position: 28.01

GC content: 39.47

Gene sequence:

>603_bases
TTGACGTTTGTGCTGATTGTAAAGGAGGACATAATATCTCGGATCAATAATGGCGATGCCAAAGCATTTGAACAATTATA
TACGACCTTCTACGTGTACTTGTGCGCCGTAGCGACTAAATATGTCTATAATTCGGAGGCGGCACGTGAGATCGTTAATG
ATGTTTTTATGAATGTATGGAATCACCATTCGGCGTTAATACATCCGGTAAACGCTTATTTAATTCGCTCGGTACGTAAT
TATTGCCTGAATTATTTAAGAGATAAACGTCAGCAAGAAGTCCCTTTATCAGATGTACAAGAAAACTTATTGTCGATACA
AGAGTTGCAGATAGACGCCGATCCCCATCCGTTGGCTTATCTGGAGAATAAGGAATTCGAGGAGAAAATCTATCGTGCCG
TGGATTCCTTGCCCGCTAAATGCCGGGATATCTTCGTGCAATATCTTTACCATAACAAGACCTATGAGGAAATAGCGATA
ACAAATCATATCAGTTCCAGTACGGTACGAGTACAGATCAAGATCGGTTTGGCGAAGTTGCGTGAACTTTTAGGCGATCT
TTACCCTCTTTTCTTACTTATATTTAATTTTTTCGAAAAATAA

Upstream 100 bases:

>100_bases
GAGCTGTTTGGCGCTATTACCCTATACTTTCTTTTAAAATGAGGTAATCTCTGGAATATTTCATTATTTTTGTGATTCAA
TTGTGAGTGAAACTTAAGGG

Downstream 100 bases:

>100_bases
TTGGAATCTCCTTAAACGGAATCTCTAAAACAGGTGTATATAATAGAAACCGGGTTGAAAACCGGCTCCTTTGTTAATAT
CATGGAAATAGAGAATAAAC

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-H Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; ECF Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTFVLIVKEDIISRINNGDAKAFEQLYTTFYVYLCAVATKYVYNSEAAREIVNDVFMNVWNHHSALIHPVNAYLIRSVRN
YCLNYLRDKRQQEVPLSDVQENLLSIQELQIDADPHPLAYLENKEFEEKIYRAVDSLPAKCRDIFVQYLYHNKTYEEIAI
TNHISSSTVRVQIKIGLAKLRELLGDLYPLFLLIFNFFEK

Sequences:

>Translated_200_residues
MTFVLIVKEDIISRINNGDAKAFEQLYTTFYVYLCAVATKYVYNSEAAREIVNDVFMNVWNHHSALIHPVNAYLIRSVRN
YCLNYLRDKRQQEVPLSDVQENLLSIQELQIDADPHPLAYLENKEFEEKIYRAVDSLPAKCRDIFVQYLYHNKTYEEIAI
TNHISSSTVRVQIKIGLAKLRELLGDLYPLFLLIFNFFEK
>Mature_199_residues
TFVLIVKEDIISRINNGDAKAFEQLYTTFYVYLCAVATKYVYNSEAAREIVNDVFMNVWNHHSALIHPVNAYLIRSVRNY
CLNYLRDKRQQEVPLSDVQENLLSIQELQIDADPHPLAYLENKEFEEKIYRAVDSLPAKCRDIFVQYLYHNKTYEEIAIT
NHISSSTVRVQIKIGLAKLRELLGDLYPLFLLIFNFFEK

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23477; Mature: 23346

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFVLIVKEDIISRINNGDAKAFEQLYTTFYVYLCAVATKYVYNSEAAREIVNDVFMNVW
CEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
NHHSALIHPVNAYLIRSVRNYCLNYLRDKRQQEVPLSDVQENLLSIQELQIDADPHPLAY
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
LENKEFEEKIYRAVDSLPAKCRDIFVQYLYHNKTYEEIAITNHISSSTVRVQIKIGLAKL
HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECHHHH
RELLGDLYPLFLLIFNFFEK
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFVLIVKEDIISRINNGDAKAFEQLYTTFYVYLCAVATKYVYNSEAAREIVNDVFMNVW
EEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
NHHSALIHPVNAYLIRSVRNYCLNYLRDKRQQEVPLSDVQENLLSIQELQIDADPHPLAY
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
LENKEFEEKIYRAVDSLPAKCRDIFVQYLYHNKTYEEIAITNHISSSTVRVQIKIGLAKL
HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECHHHH
RELLGDLYPLFLLIFNFFEK
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA