| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is kpsD [H]
Identifier: 150007788
GI number: 150007788
Start: 1324654
End: 1327032
Strand: Reverse
Name: kpsD [H]
Synonym: BDI_1146
Alternate gene names: 150007788
Gene position: 1327032-1324654 (Counterclockwise)
Preceding gene: 150007789
Following gene: 150007787
Centisome position: 27.58
GC content: 46.83
Gene sequence:
>2379_bases ATGAATTTATCGTTTAAGAACGTACTATGCGTATGTTGCTTATTGCTGTCGGGATCTGTGTATGCGCAGGTTCCGCAAGA CTTGATTGACAAGGCGAAAGCCGCTGGAATGTCGGATACGCAGATACAGCAGGAATTAGCCAAGCGTATGAAACAAGAAG GGGGATCTGTCGGATCTCAAGCTACCGCTACCGATGCGAAGGTTAGCGACCGGGTAATGCCGGTAATCGATGAAGGACAA TCCTTAGAAGCCCAACGTAGAAATAATCTTCCTGCTTCAGCCATGGAGAATACCGTATTCGGGCATGAAATCTTCTCAAA CAAGAACTTATCTTTTGCCCCAGATTTAAACATCCCTACACCTAAGGATTATGTGCTTTCCGCTGGTGATGAGTTATTGA TTAATGTATGGGGAGATTCCGAGCTAAACTTGAAATTAAAGATCTCTCCGGACGGTACGATCCTTGTACCAAATTTAGGT CCGGTGTCGGTCAGTGGATTGACGATCGCTGGCGCTGAGACTCGTCTGCGTCAGGAGTTGAGCCAGATTATGTCTACGCT GTCTGGTTCGGGAGAGGGGAATACCTTTGTTTCCGTCAGTTTGAGCCAGATTCGTAGCATGAAGGTGAATATTGTCGGCG AGGTAGTCGCTCCCGGTACGTATACATTACCTTCATTCGCCACATTATTTAATGCGTTGTATGCCGCCGGTGGTGTGAAT AAGATTGGTTCTTTGCGTAGCATCAAGGTATATCGTAATAGCAAGGAAATCGCTAATCTCGACGTATATGATTATTTATT GAACGGAAAGTACACAACGAATGTCCGTTTGGAAGAGAACGATATGATTATGGTAGGCCCGTACGACCAGTTAGCGGTGG TTCGAGGTAAGGTGAAACGTAATCGTATTTTCGAGTTGCGCAAGGGCGAGACCTTGAAGCAATTGCTGGATATGGCTGGC GGATTTACCGGCGACGCTTATACGAAGGACGTACAAGTGAAGCGTAAATCAGATAGTCGTTACCAGATCTCTACGGTTTC GGAGGATAAGTTCGCTTCTTTCGTGATGCAGGATGGCGATTCTTTGCAGGTAGATTCCGTTATTCCTTTTTATGAGAATC GTTTGGTCGTGACGGGAGCTGTATGGCGTCCGGGAGAATATGAGTTAAGTCCGTCGGTTCGTACGGTAAAGCAATTGGTA AAACAGGCCGCAGGTCTTAAAGGAGACGAGTTCGCCGGCCGTGCCTTGATTACCCGTTTGAATCCGGATTTCACGACTAC GATGATCGCCGTGGATATTCGTGGTATCTTGAACGGTACCGCTCCAGATGTGGAGTTGCAAGCGGAAGACCAATTAAGCA TTCCTTCCCTATTCGATTTGCGCGAACCTTATACGATCAAGGTTGGCGGAGCCGTGAATTATCCGGATACGGTGCTTCCG TATCGTCATAATTTGACAATAGAAGACGCTATCATGATGGCAGGTGGTTTAAGAGAGTCCGCTTCTTCTATTAATGTAGA GGTAGCCCGTCGTGTGAAGGATCCTAGTTCCAATCAGAATGTCAACCGGATCGCCGATGTATATAACTTCTCGTTGAGTG AGGACTTCAAGTTGAATGCGGGAGATACGATCTTCACATTGGAGCCGTTCGATGAGGTTTATGTTCGTTTCTCCCCGGGG TATCATGAGCAACAGGTCGTGAAGGTGAACGGCGAGATCACTTTTGCCGGTAGCTATGTATTGGCTACGAAGAACGCTCG CTTGAGTGATATTATCGCGAAAGCGGGAGGAGTTACCCCAGAGTCTTATGTAAAAGGTGCTAGCTTGAAACGTCAGTTGA CAGAAGATGAATTGAAACGCATGGAGACCCTTCTGGCTTTAAGTGAGGCGAATAAGCAAAGCCGGGATTCCATCGGTGTA GCGTTGATGAATGTGAAGGACTATTCCGTAGGTATTGATTTAGAGAAAGCGTTGGCAAATCCGGGTAGTATCGATGACGT TGTGCTTCGTGACGGCGATGAGCTTTATATCCCGCAGATGCAAAGTACGGTGAAGATGAGCGGAGCCGTGACTTATCCGA ACAGCGTAACTTACACGAAAGGTATGTCGGTTATGGATTGCTTGTCTCAAGCCGGTGGTTATAATGATATCGCACGTAAG TATCCGATCGTAATATATATGAATGGTAAGGTCGCTACGACGAAGCGTACCGCTATCTTTTTCAAGCGTTATCCGAAAGT GGAGCCGGGCTGTGAGATCGTAGTTCCGACGAAAACGCAACGTGAGCGCCGAAGCTTGGCTGAGATCATGAGTATCAGTA GCTCCGCTACCTCTATGGCTGCGATGATTACCTCTATTGTTAACATGATTAAAAACTAA
Upstream 100 bases:
>100_bases TCTTTATCTTTGCCAGCTGAAAATCTAGAGAATAGCTGCTTTTTTTAAGTTAGTCGCTTATAGCAGGGGTGGTATATAAT AAAAAACAATAATAGACTGT
Downstream 100 bases:
>100_bases TCAGGCATGGATACGATAAACGAGATAAAAAGACAAGAGTTACCTGAGGAGCAGGAGATCGATTTAATCGAACTGGCGCA AAAACTGTGGAAAGAGCGTA
Product: putative capsule polysaccharide export protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 792; Mature: 792
Protein sequence:
>792_residues MNLSFKNVLCVCCLLLSGSVYAQVPQDLIDKAKAAGMSDTQIQQELAKRMKQEGGSVGSQATATDAKVSDRVMPVIDEGQ SLEAQRRNNLPASAMENTVFGHEIFSNKNLSFAPDLNIPTPKDYVLSAGDELLINVWGDSELNLKLKISPDGTILVPNLG PVSVSGLTIAGAETRLRQELSQIMSTLSGSGEGNTFVSVSLSQIRSMKVNIVGEVVAPGTYTLPSFATLFNALYAAGGVN KIGSLRSIKVYRNSKEIANLDVYDYLLNGKYTTNVRLEENDMIMVGPYDQLAVVRGKVKRNRIFELRKGETLKQLLDMAG GFTGDAYTKDVQVKRKSDSRYQISTVSEDKFASFVMQDGDSLQVDSVIPFYENRLVVTGAVWRPGEYELSPSVRTVKQLV KQAAGLKGDEFAGRALITRLNPDFTTTMIAVDIRGILNGTAPDVELQAEDQLSIPSLFDLREPYTIKVGGAVNYPDTVLP YRHNLTIEDAIMMAGGLRESASSINVEVARRVKDPSSNQNVNRIADVYNFSLSEDFKLNAGDTIFTLEPFDEVYVRFSPG YHEQQVVKVNGEITFAGSYVLATKNARLSDIIAKAGGVTPESYVKGASLKRQLTEDELKRMETLLALSEANKQSRDSIGV ALMNVKDYSVGIDLEKALANPGSIDDVVLRDGDELYIPQMQSTVKMSGAVTYPNSVTYTKGMSVMDCLSQAGGYNDIARK YPIVIYMNGKVATTKRTAIFFKRYPKVEPGCEIVVPTKTQRERRSLAEIMSISSSATSMAAMITSIVNMIKN
Sequences:
>Translated_792_residues MNLSFKNVLCVCCLLLSGSVYAQVPQDLIDKAKAAGMSDTQIQQELAKRMKQEGGSVGSQATATDAKVSDRVMPVIDEGQ SLEAQRRNNLPASAMENTVFGHEIFSNKNLSFAPDLNIPTPKDYVLSAGDELLINVWGDSELNLKLKISPDGTILVPNLG PVSVSGLTIAGAETRLRQELSQIMSTLSGSGEGNTFVSVSLSQIRSMKVNIVGEVVAPGTYTLPSFATLFNALYAAGGVN KIGSLRSIKVYRNSKEIANLDVYDYLLNGKYTTNVRLEENDMIMVGPYDQLAVVRGKVKRNRIFELRKGETLKQLLDMAG GFTGDAYTKDVQVKRKSDSRYQISTVSEDKFASFVMQDGDSLQVDSVIPFYENRLVVTGAVWRPGEYELSPSVRTVKQLV KQAAGLKGDEFAGRALITRLNPDFTTTMIAVDIRGILNGTAPDVELQAEDQLSIPSLFDLREPYTIKVGGAVNYPDTVLP YRHNLTIEDAIMMAGGLRESASSINVEVARRVKDPSSNQNVNRIADVYNFSLSEDFKLNAGDTIFTLEPFDEVYVRFSPG YHEQQVVKVNGEITFAGSYVLATKNARLSDIIAKAGGVTPESYVKGASLKRQLTEDELKRMETLLALSEANKQSRDSIGV ALMNVKDYSVGIDLEKALANPGSIDDVVLRDGDELYIPQMQSTVKMSGAVTYPNSVTYTKGMSVMDCLSQAGGYNDIARK YPIVIYMNGKVATTKRTAIFFKRYPKVEPGCEIVVPTKTQRERRSLAEIMSISSSATSMAAMITSIVNMIKN >Mature_792_residues MNLSFKNVLCVCCLLLSGSVYAQVPQDLIDKAKAAGMSDTQIQQELAKRMKQEGGSVGSQATATDAKVSDRVMPVIDEGQ SLEAQRRNNLPASAMENTVFGHEIFSNKNLSFAPDLNIPTPKDYVLSAGDELLINVWGDSELNLKLKISPDGTILVPNLG PVSVSGLTIAGAETRLRQELSQIMSTLSGSGEGNTFVSVSLSQIRSMKVNIVGEVVAPGTYTLPSFATLFNALYAAGGVN KIGSLRSIKVYRNSKEIANLDVYDYLLNGKYTTNVRLEENDMIMVGPYDQLAVVRGKVKRNRIFELRKGETLKQLLDMAG GFTGDAYTKDVQVKRKSDSRYQISTVSEDKFASFVMQDGDSLQVDSVIPFYENRLVVTGAVWRPGEYELSPSVRTVKQLV KQAAGLKGDEFAGRALITRLNPDFTTTMIAVDIRGILNGTAPDVELQAEDQLSIPSLFDLREPYTIKVGGAVNYPDTVLP YRHNLTIEDAIMMAGGLRESASSINVEVARRVKDPSSNQNVNRIADVYNFSLSEDFKLNAGDTIFTLEPFDEVYVRFSPG YHEQQVVKVNGEITFAGSYVLATKNARLSDIIAKAGGVTPESYVKGASLKRQLTEDELKRMETLLALSEANKQSRDSIGV ALMNVKDYSVGIDLEKALANPGSIDDVVLRDGDELYIPQMQSTVKMSGAVTYPNSVTYTKGMSVMDCLSQAGGYNDIARK YPIVIYMNGKVATTKRTAIFFKRYPKVEPGCEIVVPTKTQRERRSLAEIMSISSSATSMAAMITSIVNMIKN
Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli K5 kpsD [H]
Homologues:
Organism=Escherichia coli, GI1787218, Length=217, Percent_Identity=26.2672811059908, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 [H]
Pfam domain/function: PF02563 Poly_export [H]
EC number: NA
Molecular weight: Translated: 86616; Mature: 86616
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLSFKNVLCVCCLLLSGSVYAQVPQDLIDKAKAAGMSDTQIQQELAKRMKQEGGSVGSQ CCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC ATATDAKVSDRVMPVIDEGQSLEAQRRNNLPASAMENTVFGHEIFSNKNLSFAPDLNIPT CCCCCCHHCCCCCCEECCCCCCHHHHHCCCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCC PKDYVLSAGDELLINVWGDSELNLKLKISPDGTILVPNLGPVSVSGLTIAGAETRLRQEL CCHHEECCCCEEEEEEECCCCEEEEEEECCCCEEEECCCCCEEECCEEEECHHHHHHHHH SQIMSTLSGSGEGNTFVSVSLSQIRSMKVNIVGEVVAPGTYTLPSFATLFNALYAAGGVN HHHHHHHCCCCCCCEEEEEEHHHHHCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCH KIGSLRSIKVYRNSKEIANLDVYDYLLNGKYTTNVRLEENDMIMVGPYDQLAVVRGKVKR HCCCCEEEEEEECCCHHCCCCHHHHHHCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHH NRIFELRKGETLKQLLDMAGGFTGDAYTKDVQVKRKSDSRYQISTVSEDKFASFVMQDGD HHEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHCCCC SLQVDSVIPFYENRLVVTGAVWRPGEYELSPSVRTVKQLVKQAAGLKGDEFAGRALITRL CEEECCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC NPDFTTTMIAVDIRGILNGTAPDVELQAEDQLSIPSLFDLREPYTIKVGGAVNYPDTVLP CCCCEEEEEEEEEHHHHCCCCCCCEEECCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCC YRHNLTIEDAIMMAGGLRESASSINVEVARRVKDPSSNQNVNRIADVYNFSLSEDFKLNA CCCCCCHHHHHHHHCCCHHCHHHCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEECC GDTIFTLEPFDEVYVRFSPGYHEQQVVKVNGEITFAGSYVLATKNARLSDIIAKAGGVTP CCEEEEECCCCEEEEEECCCCCCCEEEEECCEEEEECEEEEEECCCHHHHHHHHCCCCCH ESYVKGASLKRQLTEDELKRMETLLALSEANKQSRDSIGVALMNVKDYSVGIDLEKALAN HHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECEEECCCHHHHHCC PGSIDDVVLRDGDELYIPQMQSTVKMSGAVTYPNSVTYTKGMSVMDCLSQAGGYNDIARK CCCCCEEEEECCCEEECCCHHHHEEECCEEECCCCEEEECCCHHHHHHHHCCCCCHHHHH YPIVIYMNGKVATTKRTAIFFKRYPKVEPGCEIVVPTKTQRERRSLAEIMSISSSATSMA CCEEEEECCEEEECHHEEEEEHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHHHHH AMITSIVNMIKN HHHHHHHHHHCC >Mature Secondary Structure MNLSFKNVLCVCCLLLSGSVYAQVPQDLIDKAKAAGMSDTQIQQELAKRMKQEGGSVGSQ CCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC ATATDAKVSDRVMPVIDEGQSLEAQRRNNLPASAMENTVFGHEIFSNKNLSFAPDLNIPT CCCCCCHHCCCCCCEECCCCCCHHHHHCCCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCC PKDYVLSAGDELLINVWGDSELNLKLKISPDGTILVPNLGPVSVSGLTIAGAETRLRQEL CCHHEECCCCEEEEEEECCCCEEEEEEECCCCEEEECCCCCEEECCEEEECHHHHHHHHH SQIMSTLSGSGEGNTFVSVSLSQIRSMKVNIVGEVVAPGTYTLPSFATLFNALYAAGGVN HHHHHHHCCCCCCCEEEEEEHHHHHCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCH KIGSLRSIKVYRNSKEIANLDVYDYLLNGKYTTNVRLEENDMIMVGPYDQLAVVRGKVKR HCCCCEEEEEEECCCHHCCCCHHHHHHCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHH NRIFELRKGETLKQLLDMAGGFTGDAYTKDVQVKRKSDSRYQISTVSEDKFASFVMQDGD HHEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHCCCC SLQVDSVIPFYENRLVVTGAVWRPGEYELSPSVRTVKQLVKQAAGLKGDEFAGRALITRL CEEECCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC NPDFTTTMIAVDIRGILNGTAPDVELQAEDQLSIPSLFDLREPYTIKVGGAVNYPDTVLP CCCCEEEEEEEEEHHHHCCCCCCCEEECCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCC YRHNLTIEDAIMMAGGLRESASSINVEVARRVKDPSSNQNVNRIADVYNFSLSEDFKLNA CCCCCCHHHHHHHHCCCHHCHHHCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEECC GDTIFTLEPFDEVYVRFSPGYHEQQVVKVNGEITFAGSYVLATKNARLSDIIAKAGGVTP CCEEEEECCCCEEEEEECCCCCCCEEEEECCEEEEECEEEEEECCCHHHHHHHHCCCCCH ESYVKGASLKRQLTEDELKRMETLLALSEANKQSRDSIGVALMNVKDYSVGIDLEKALAN HHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECEEECCCHHHHHCC PGSIDDVVLRDGDELYIPQMQSTVKMSGAVTYPNSVTYTKGMSVMDCLSQAGGYNDIARK CCCCCEEEEECCCEEECCCHHHHEEECCEEECCCCEEEECCCHHHHHHHHCCCCCHHHHH YPIVIYMNGKVATTKRTAIFFKRYPKVEPGCEIVVPTKTQRERRSLAEIMSISSSATSMA CCEEEEECCEEEECHHEEEEEHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHHHHH AMITSIVNMIKN HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021185 [H]