| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is 150007784
Identifier: 150007784
GI number: 150007784
Start: 1319346
End: 1321859
Strand: Direct
Name: 150007784
Synonym: BDI_1142
Alternate gene names: NA
Gene position: 1319346-1321859 (Clockwise)
Preceding gene: 150007783
Following gene: 150007785
Centisome position: 27.42
GC content: 49.36
Gene sequence:
>2514_bases ATGAAGACACTAAAGTATTTACTCGCCACCATGCTCCTTCTAGGCGTTTGTAACCTAACGCATAGCCAAAAGCTATCCCT AGGAATCTTCCCCGAGCCCCAAGAGGTAACTATCTCCAGCCAGACATACGCGCCGCCCCATGGATACGCCCTACGAGGCA TAAATAATCCGGACGCAGACGCAGTCAGACTACTTAAAGAAGCGCTACCTTTCGCTAAATCCGGCAAATCCCTCCCCTTA GAGATCAAGAAGCTAAAAGACAAAGCCCCGGAGATGCAACGCTCGGGTGCCTATACGCTGACGATCACTAAAAAAGGTAT CACGATCGGGATCGTAGACGATAATTCCTTGTTCTACGCCGCCCAAACCCTCAAGCAATTGGTCAAGTATGACGAGGGTA AGAAGATCCTGCCTCTCTGCTCGATCAAGGACTATCCGGACGTATTATTCCGGGGTACCGTGGAAGGCTTCTACGGACAG CCTTGGAGCCACGCCGACCGTATCGAGCAAATCCGCTTTTACGGAAGGATCAAGCTGAACACCTATATCTATGGTCCGAA AGATGATCCTTATCACAGCTCCCCCAACTGGCGCAAACCGTATCCCGCCGAGGAAGCCGAGCATATCAAGGAACTAGCGA AAGAGGCCGCCCATAACAAAGTAAACTTCGTTTGGGCCATCCACCCGGGACAAGATATTCAATGGAACCAGACGGACAGC ATGAACATCCTTTCCAAATTCGGGAAAATGTACGATTTGGGCGTACGCTCTTTCGCCGTCTTCTTCGATGATATATCCGG AGAGGGAGCCCGCCCGGAAAAGCAAGCCGGCTTATTGAATTACATCCATAAGGAGTTTATCCGCAAGAAAAGCGACGTGC AGCCCCTGATCATGTGCCCTACCGAATACAACCGCTCATGGGCTAAGACCGATTATCTGGATATCCTCGGTACCCAACTC GACCCCGCCATCCAAATCATGTGGACCGGAGACCGTGTCGTAGCCGATATCACGAAAGAAGGTGTCGAGTGGGTAAACAA CCGTATCCGTCGTCCCGCCTATATCTGGTGGAACTTCCCCGTAAGCGATTATTGCCAAGATCATTTGTTGATGGGACCCG CCTACGGCCTAGATACGCAAGCCGCCGGCACCATGACCGGATTCGTATCCAATCCTATGGAATACGCCGAGGCTTCCAAG GTCGCTATATTCGGCGTTGGAATGTACACTTGGAATATCGAGAATTACGATCCTACACAGGCATGGAAAGACGCTTGCGA CTTCATCATGCCGGAGGCCTCCATGGCTTTCCGCATTTTCTGCGAGCATAACTGCGATCCGGGTCCGAACGGACATCAAT ACCGCCGGGAAGAGTCCGCTAACTATGTGGCTCCTATCCAGACATTCCTCGCCGGATATAAGAAAAACACGTTCCCGGAG CAAAGCGCGAATCTTCTGGGAACCTTATTCGCTCAAATCACGGCTTCCCCGAGTATGATCTATAGCCAAAGTCCCAATAA ACGCTTGATCGAGCAAATCAATCCATGGCTTATCCAATTCGAGTTCTTAGGAAAAGCCGGAACAAGCGCTCTGCATATGG CGCACGCTTGGTATGAGAAAGACCGGTCTTATACGTGGCAACGCTATCTGGAAACATCCGCTTTGCTAGATAGCATGAAA CTGATAAACCGCACGCTGAACCAGAAGGCGCAGCCTAAAGGCGTGAAAGTCGGATCGAAAGTCTTACACCCTTTCATCGT AGACTTATACCGCCAGACAGGTCGTAACCTGCTATCTACGGACGGTATCGCCCCGGACGAGGTGAAGGTTAGCATCCCTT CCATATTCACGAATATCGACCAATTAAAGAGCCAGCCTTGTGCCGAGGGTGACAATACGGTCGGTTACGTTCCCCTATTC GAGGTAGTCAAGGTACAACCTAACCAATATCTGGGTATCGGCTGGGAAATCCAGAAAGAAGCGGAATCCTTCTGTTTCAA TCTTCCGAAAAGCAACCAACCCGGACGGGTATTCGAGTGGTCCGCCGACGGAAAGAGCTGGAGCCTAATCCCTCATGTCT CCACGGAAAACGCTAAAGATACGATCCGCACCATCGACCCGAAAGCCCGTTATATCCGTATGCGAAATAACTCGGATCAG CAAATGGAGCTATACGTACTAGGATTCACGGCGACAACCAAACAAGACCCGCAAATCAATGAGGCTCTTATGATGTACGA TATGAACCTAGATACGTATAAGAACTTGAACCCGGGAGAAATGATTCATATAAAATGTGATGATATCAACGCCGTATCTT TCTTCCTCTCCGGAAGTAACGAGAATCTGGTATCCATCACCGGCCTCTCCCAAGATGGCGAGAAAAACATCGTCTATCAA GGAAACGTAGGCTACATCAAATTAAATAAAACCATGTTCGAGGATTTCTCTTCTTTAGAAATCACCACAATAGGAAAAGA ATCTATACATATCCACCAGATCGTTAGGGAATAA
Upstream 100 bases:
>100_bases ATCTAAATACGGAGGGCACGGAACAAATCTGTGTATTCCGTGTGCTCCGTGTTTAATTATTTCATACATTTACGAACGTT AACATTAAATCATATCGTAT
Downstream 100 bases:
>100_bases TAAATAAAAAAGTACCGATTTCTTTCTCTCTTAGATGGAAGAAGGAGATCGGTACTTTTTTATTTATTCGTACAATTCGG GTGTATCTTATTTTTGGCAC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; Beta-hexosaminidase; GH84; Hexosaminidase B; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 837; Mature: 837
Protein sequence:
>837_residues MKTLKYLLATMLLLGVCNLTHSQKLSLGIFPEPQEVTISSQTYAPPHGYALRGINNPDADAVRLLKEALPFAKSGKSLPL EIKKLKDKAPEMQRSGAYTLTITKKGITIGIVDDNSLFYAAQTLKQLVKYDEGKKILPLCSIKDYPDVLFRGTVEGFYGQ PWSHADRIEQIRFYGRIKLNTYIYGPKDDPYHSSPNWRKPYPAEEAEHIKELAKEAAHNKVNFVWAIHPGQDIQWNQTDS MNILSKFGKMYDLGVRSFAVFFDDISGEGARPEKQAGLLNYIHKEFIRKKSDVQPLIMCPTEYNRSWAKTDYLDILGTQL DPAIQIMWTGDRVVADITKEGVEWVNNRIRRPAYIWWNFPVSDYCQDHLLMGPAYGLDTQAAGTMTGFVSNPMEYAEASK VAIFGVGMYTWNIENYDPTQAWKDACDFIMPEASMAFRIFCEHNCDPGPNGHQYRREESANYVAPIQTFLAGYKKNTFPE QSANLLGTLFAQITASPSMIYSQSPNKRLIEQINPWLIQFEFLGKAGTSALHMAHAWYEKDRSYTWQRYLETSALLDSMK LINRTLNQKAQPKGVKVGSKVLHPFIVDLYRQTGRNLLSTDGIAPDEVKVSIPSIFTNIDQLKSQPCAEGDNTVGYVPLF EVVKVQPNQYLGIGWEIQKEAESFCFNLPKSNQPGRVFEWSADGKSWSLIPHVSTENAKDTIRTIDPKARYIRMRNNSDQ QMELYVLGFTATTKQDPQINEALMMYDMNLDTYKNLNPGEMIHIKCDDINAVSFFLSGSNENLVSITGLSQDGEKNIVYQ GNVGYIKLNKTMFEDFSSLEITTIGKESIHIHQIVRE
Sequences:
>Translated_837_residues MKTLKYLLATMLLLGVCNLTHSQKLSLGIFPEPQEVTISSQTYAPPHGYALRGINNPDADAVRLLKEALPFAKSGKSLPL EIKKLKDKAPEMQRSGAYTLTITKKGITIGIVDDNSLFYAAQTLKQLVKYDEGKKILPLCSIKDYPDVLFRGTVEGFYGQ PWSHADRIEQIRFYGRIKLNTYIYGPKDDPYHSSPNWRKPYPAEEAEHIKELAKEAAHNKVNFVWAIHPGQDIQWNQTDS MNILSKFGKMYDLGVRSFAVFFDDISGEGARPEKQAGLLNYIHKEFIRKKSDVQPLIMCPTEYNRSWAKTDYLDILGTQL DPAIQIMWTGDRVVADITKEGVEWVNNRIRRPAYIWWNFPVSDYCQDHLLMGPAYGLDTQAAGTMTGFVSNPMEYAEASK VAIFGVGMYTWNIENYDPTQAWKDACDFIMPEASMAFRIFCEHNCDPGPNGHQYRREESANYVAPIQTFLAGYKKNTFPE QSANLLGTLFAQITASPSMIYSQSPNKRLIEQINPWLIQFEFLGKAGTSALHMAHAWYEKDRSYTWQRYLETSALLDSMK LINRTLNQKAQPKGVKVGSKVLHPFIVDLYRQTGRNLLSTDGIAPDEVKVSIPSIFTNIDQLKSQPCAEGDNTVGYVPLF EVVKVQPNQYLGIGWEIQKEAESFCFNLPKSNQPGRVFEWSADGKSWSLIPHVSTENAKDTIRTIDPKARYIRMRNNSDQ QMELYVLGFTATTKQDPQINEALMMYDMNLDTYKNLNPGEMIHIKCDDINAVSFFLSGSNENLVSITGLSQDGEKNIVYQ GNVGYIKLNKTMFEDFSSLEITTIGKESIHIHQIVRE >Mature_837_residues MKTLKYLLATMLLLGVCNLTHSQKLSLGIFPEPQEVTISSQTYAPPHGYALRGINNPDADAVRLLKEALPFAKSGKSLPL EIKKLKDKAPEMQRSGAYTLTITKKGITIGIVDDNSLFYAAQTLKQLVKYDEGKKILPLCSIKDYPDVLFRGTVEGFYGQ PWSHADRIEQIRFYGRIKLNTYIYGPKDDPYHSSPNWRKPYPAEEAEHIKELAKEAAHNKVNFVWAIHPGQDIQWNQTDS MNILSKFGKMYDLGVRSFAVFFDDISGEGARPEKQAGLLNYIHKEFIRKKSDVQPLIMCPTEYNRSWAKTDYLDILGTQL DPAIQIMWTGDRVVADITKEGVEWVNNRIRRPAYIWWNFPVSDYCQDHLLMGPAYGLDTQAAGTMTGFVSNPMEYAEASK VAIFGVGMYTWNIENYDPTQAWKDACDFIMPEASMAFRIFCEHNCDPGPNGHQYRREESANYVAPIQTFLAGYKKNTFPE QSANLLGTLFAQITASPSMIYSQSPNKRLIEQINPWLIQFEFLGKAGTSALHMAHAWYEKDRSYTWQRYLETSALLDSMK LINRTLNQKAQPKGVKVGSKVLHPFIVDLYRQTGRNLLSTDGIAPDEVKVSIPSIFTNIDQLKSQPCAEGDNTVGYVPLF EVVKVQPNQYLGIGWEIQKEAESFCFNLPKSNQPGRVFEWSADGKSWSLIPHVSTENAKDTIRTIDPKARYIRMRNNSDQ QMELYVLGFTATTKQDPQINEALMMYDMNLDTYKNLNPGEMIHIKCDDINAVSFFLSGSNENLVSITGLSQDGEKNIVYQ GNVGYIKLNKTMFEDFSSLEITTIGKESIHIHQIVRE
Specific function: Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 84 family [H]
Homologues:
Organism=Homo sapiens, GI11024698, Length=276, Percent_Identity=35.1449275362319, Blast_Score=159, Evalue=1e-38, Organism=Homo sapiens, GI215490056, Length=278, Percent_Identity=34.8920863309352, Blast_Score=159, Evalue=1e-38, Organism=Caenorhabditis elegans, GI193211004, Length=291, Percent_Identity=34.020618556701, Blast_Score=159, Evalue=7e-39, Organism=Caenorhabditis elegans, GI193211002, Length=278, Percent_Identity=35.2517985611511, Blast_Score=158, Evalue=1e-38, Organism=Drosophila melanogaster, GI24648670, Length=278, Percent_Identity=29.4964028776978, Blast_Score=142, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR011496 - InterPro: IPR017853 [H]
Pfam domain/function: PF02838 Glyco_hydro_20b; PF07555 NAGidase [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 95006; Mature: 95006
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLKYLLATMLLLGVCNLTHSQKLSLGIFPEPQEVTISSQTYAPPHGYALRGINNPDAD CCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCEECCCCCCCHH AVRLLKEALPFAKSGKSLPLEIKKLKDKAPEMQRSGAYTLTITKKGITIGIVDDNSLFYA HHHHHHHHCCHHHCCCCCCCHHHHHHCCCCHHHHCCCEEEEEEECCEEEEEEECCCEEHH AQTLKQLVKYDEGKKILPLCSIKDYPDVLFRGTVEGFYGQPWSHADRIEQIRFYGRIKLN HHHHHHHHHHCCCCEEEEECCCCCCCHHHEECCCCCCCCCCCCHHHHHHHHHEEEEEEEE TYIYGPKDDPYHSSPNWRKPYPAEEAEHIKELAKEAAHNKVNFVWAIHPGQDIQWNQTDS EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCH MNILSKFGKMYDLGVRSFAVFFDDISGEGARPEKQAGLLNYIHKEFIRKKSDVQPLIMCP HHHHHHHHHHHHHCHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECC TEYNRSWAKTDYLDILGTQLDPAIQIMWTGDRVVADITKEGVEWVNNRIRRPAYIWWNFP CCCCCCCCCCHHHHHHCCCCCCEEEEEECCCEEEEHHHHHHHHHHHHHCCCCEEEEEECC VSDYCQDHLLMGPAYGLDTQAAGTMTGFVSNPMEYAEASKVAIFGVGMYTWNIENYDPTQ HHHHHHHHEEECCCCCCCCCCCCCCHHHHCCCHHHHCCCCEEEEEEEEEEEECCCCCHHH AWKDACDFIMPEASMAFRIFCEHNCDPGPNGHQYRREESANYVAPIQTFLAGYKKNTFPE HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCC QSANLLGTLFAQITASPSMIYSQSPNKRLIEQINPWLIQFEFLGKAGTSALHMAHAWYEK HHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHH DRSYTWQRYLETSALLDSMKLINRTLNQKAQPKGVKVGSKVLHPFIVDLYRQTGRNLLST CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECC DGIAPDEVKVSIPSIFTNIDQLKSQPCAEGDNTVGYVPLFEVVKVQPNQYLGIGWEIQKE CCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEEECCEEEHHH AESFCFNLPKSNQPGRVFEWSADGKSWSLIPHVSTENAKDTIRTIDPKARYIRMRNNSDQ HHHHHEECCCCCCCCEEEEECCCCCCEEEEECCCCCCCHHHHHCCCCCEEEEEECCCCCC QMELYVLGFTATTKQDPQINEALMMYDMNLDTYKNLNPGEMIHIKCDDINAVSFFLSGSN EEEEEEEEEEECCCCCCCCCCEEEEEECCCHHCCCCCCCCEEEEEECCCCEEEEEEECCC ENLVSITGLSQDGEKNIVYQGNVGYIKLNKTMFEDFSSLEITTIGKESIHIHQIVRE CCEEEEEECCCCCCCCEEEECCCCEEEECHHHHHCCCCEEEEEECCCCCHHHHHHCC >Mature Secondary Structure MKTLKYLLATMLLLGVCNLTHSQKLSLGIFPEPQEVTISSQTYAPPHGYALRGINNPDAD CCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCEECCCCCCCHH AVRLLKEALPFAKSGKSLPLEIKKLKDKAPEMQRSGAYTLTITKKGITIGIVDDNSLFYA HHHHHHHHCCHHHCCCCCCCHHHHHHCCCCHHHHCCCEEEEEEECCEEEEEEECCCEEHH AQTLKQLVKYDEGKKILPLCSIKDYPDVLFRGTVEGFYGQPWSHADRIEQIRFYGRIKLN HHHHHHHHHHCCCCEEEEECCCCCCCHHHEECCCCCCCCCCCCHHHHHHHHHEEEEEEEE TYIYGPKDDPYHSSPNWRKPYPAEEAEHIKELAKEAAHNKVNFVWAIHPGQDIQWNQTDS EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCH MNILSKFGKMYDLGVRSFAVFFDDISGEGARPEKQAGLLNYIHKEFIRKKSDVQPLIMCP HHHHHHHHHHHHHCHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECC TEYNRSWAKTDYLDILGTQLDPAIQIMWTGDRVVADITKEGVEWVNNRIRRPAYIWWNFP CCCCCCCCCCHHHHHHCCCCCCEEEEEECCCEEEEHHHHHHHHHHHHHCCCCEEEEEECC VSDYCQDHLLMGPAYGLDTQAAGTMTGFVSNPMEYAEASKVAIFGVGMYTWNIENYDPTQ HHHHHHHHEEECCCCCCCCCCCCCCHHHHCCCHHHHCCCCEEEEEEEEEEEECCCCCHHH AWKDACDFIMPEASMAFRIFCEHNCDPGPNGHQYRREESANYVAPIQTFLAGYKKNTFPE HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCC QSANLLGTLFAQITASPSMIYSQSPNKRLIEQINPWLIQFEFLGKAGTSALHMAHAWYEK HHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHH DRSYTWQRYLETSALLDSMKLINRTLNQKAQPKGVKVGSKVLHPFIVDLYRQTGRNLLST CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECC DGIAPDEVKVSIPSIFTNIDQLKSQPCAEGDNTVGYVPLFEVVKVQPNQYLGIGWEIQKE CCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEEECCEEEHHH AESFCFNLPKSNQPGRVFEWSADGKSWSLIPHVSTENAKDTIRTIDPKARYIRMRNNSDQ HHHHHEECCCCCCCCEEEEECCCCCCEEEEECCCCCCCHHHHHCCCCCEEEEEECCCCCC QMELYVLGFTATTKQDPQINEALMMYDMNLDTYKNLNPGEMIHIKCDDINAVSFFLSGSN EEEEEEEEEEECCCCCCCCCCEEEEEECCCHHCCCCCCCCEEEEEECCCCEEEEEEECCC ENLVSITGLSQDGEKNIVYQGNVGYIKLNKTMFEDFSSLEITTIGKESIHIHQIVRE CCEEEEEECCCCCCCCEEEECCCCEEEECHHHHHCCCCEEEEEECCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12663928 [H]