| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is ppdK [H]
Identifier: 150007676
GI number: 150007676
Start: 1194573
End: 1197293
Strand: Direct
Name: ppdK [H]
Synonym: BDI_1031
Alternate gene names: 150007676
Gene position: 1194573-1197293 (Clockwise)
Preceding gene: 150007673
Following gene: 150007677
Centisome position: 24.83
GC content: 47.56
Gene sequence:
>2721_bases ATGGAAAGAAAAAGAGTTTACACGTTCGGAAATGGAAAAGCCGAAGGTAAGGCAGATATGAGAAATCTGCTGGGTGGTAA AGGCGCTAACCTTGCCGAGATGAATCTGATTGGTGTACCGGTTCCTCCGGGATTCACGATTACAACAGAAGTTTGTATAG AGTATTACGAGTTAGGCAAAGATAAAGTCGTAGAGTTGCTGAAAGCGGATGTTGAGAAGGCGATCGCTAATATCGAAACG TTAATGAACTCTAAGTTCGGTGATGTTGCCAATCCTCTGTTAGTTTCAGTTCGCTCCGGTGCCCGTGCGTCCATGCCAGG TATGATGGATACGATATTGAACCTTGGCTTGAACGACGAGGTAGTGGAAGGATTGTCTCGTAAGACGGGCAACGCTCGTT TCGCTTGGGACTCTTATCGTCGTTTCGTTCAAATGTACGGAGATGTCGTATTAGGCATGAAACCGACAAGCAAAGAGGAT ATCGATCCGTTTGAGGCGATCATCGAGGAAGTAAAGAAAGCGAAAGGCGTTAAGTTAGATAACGAGCTTGACGTTGAAGA TTTGAAAACATTGGTCTCTAAATTTAAGGCAGCCGTTAAGGCCCAGACCGGACAGGATTTCCCGACTTGCGCTTATGAAC AATTGTGGGGCGCTATCTGTGCCGTGTTCAATAGCTGGATGAATGAGCGTGCTATCCTGTATCGTAAGATGGAAGGTATT CCAGACGAGTGGGGAACGGCGGTTAGCGTACAAGCCATGGTATTCGGTAATATGGGCGATACTTCCGCTACAGGCGTTTG TTTCTCTCGTGACGCGGGTAATGGTGAGGACTTGTTCAATGGTGAGTACTTGATTAACGCTCAAGGTGAGGATGTTGTAG CAGGTATCCGTACCCCGCAACAGATTACGAAGATCGGTTCACAACGTTGGGCTGAACGTGCCGGAATCTCAGAAGAAGAA CGTATTGCTAAATATCCGTCCATGGAAGAAGCCATGCCGGAAATCTATAAGCAATTAGACGCTATCCAAGAGAAATTGGA AGATCATTATCGGGATATGCAAGATATGGAGTTTACCGTACAAGAGGGTAAACTTTGGTTCTTGCAAACCCGTAACGGCA AACGTACCGGTGCCGCTATGGTGAAAATCGCTATCGACTTATTGCATCAAGGCATGATCGACGAGAAAACAGCGTTGAAC CGTATCGAGCCGAATAAACTGGATGAGTTGCTTCACCCAGTATTCGATAAAAAAGCCGAGAAACAGGCGAAAGTATGGGT AAAAGGTTTGCCGGCTTCACCGGGTGCCGCTACCGGACAGATCGTATTCTTCGCTGATGATGCCGCTAAATGGCATGCCG ATGGCAAAAAGGTTGTCATGGTCCGTATTGAGACTTCTCCGGAAGACTTGGCCGGTATGGCTGTCGCCGAAGGTATCCTT ACCGCTCGTGGAGGTATGACTTCTCACGCCGCTGTCGTGGCTCGTGGCATGGGTAAGTGCTGTGTATCCGGCGCTGGTGC CTTGAATATCGATTATAAGAACAAGACTGTAGACGTCGATGGCGTAACCTTGAAAGAAGGTGATTATATCTCTATCAATG GTACGACCGGGGAAGTCTATGTAGGACAGGTCGAGACGAAAGCGGCAGAGTTGTCAGGTGACTTCGCGGAGCTAATGGCT TTAGCCGATAAATATACAAAATTACAAGTTCGTACAAACGCTGATACGCCTCACGACGCTTCGATCGCTCGTAGCTTCGG TGCCGTTGGTATTGGCCTTTGCCGTACGGAGCATATGTTCTTCGAAGGTGAGAAGATCAAAGCTATGCGTGAGATGATCT TGGCCGAGGACGCTGAAGGTCGTAAGAAAGCGTTGGCGAAGATCCTTCCTTATCAGAAAGAGGACTTTAAGGGTATCTTC AAGGCTATGGCCGGATGTCCTGTTACCGTTCGTTTGCTCGATCCTCCTTTGCATGAGTTCGTTCCTCACGATTTGAAAGG TCAAGAGGAAATGGCTGAGACAATGGGCGTGTCCGTTAAGGAGATCCAAAAACGTGTGGAATCTCTTTGCGAGCATAACC CGATGTTGGGTCACCGTGGTTGCCGTCTAGGTAATACATATCCGGAAATTACGGAAATGCAGACTCGGGCCATTTTAGGT GCCGCTTTGGATTTGAAGAAAGAAGGTATTGAGGCTAAACCGGAAATCATGGTACCATTAACAGGAATCTTATATGAATT CAAGGAACAAGAGAAGGTGATCCGTACCGCGGCCGAAGAGCTATTCAAGGAAGTTGGCGATCGTATCGAATTCAAGGTAG GTACGATGATCGAGATTCCTCGTGCGGCATTGACAGCGGATCGTATCGCTTCCAGCGCCGAATTCTTCTCATTCGGAACG AATGATTTGACTCAGATGACATTTGGTTACTCTCGTGACGATATCGCTTCCTTCTTACCGGTTTACTTAGAGAAGAAGAT TTTGAAGGTCGATCCGTTCCAAGTACTAGACCAAAATGGTGTAGGACAGCTGGTTCGTATGGCAACTGAGAAAGGTCGTG CCATCCGTCCGGATTTGAAATGTGGTATTTGCGGCGAGCATGGTGGTGAGCCTTCTTCCGTTAAGTTCTGCCATAAAGTT GGCTTGAATTACGTATCATGTTCACCTTTTAGAGTGCCCATCGCTCGTATCGCAGCGGCGCAAGCGGCTCTAGAAGACTA A
Upstream 100 bases:
>100_bases CAAAGTAGAAATAGCATATATTTGCAGCATTGCAAAGTTGAGATAGCAATATAACAGTTGAAATCAACAAAACTAGAATC TAAATTCAATACTGTCGAAT
Downstream 100 bases:
>100_bases TCAAGGGGTTGATTTTTAATAGTTTAAGCACACGATAGGCAGGAGGGTGGATTGAGTGATCAATCTACCCTCTATTTTTT TATAGTCATATGGTATAATC
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 906; Mature: 906
Protein sequence:
>906_residues MERKRVYTFGNGKAEGKADMRNLLGGKGANLAEMNLIGVPVPPGFTITTEVCIEYYELGKDKVVELLKADVEKAIANIET LMNSKFGDVANPLLVSVRSGARASMPGMMDTILNLGLNDEVVEGLSRKTGNARFAWDSYRRFVQMYGDVVLGMKPTSKED IDPFEAIIEEVKKAKGVKLDNELDVEDLKTLVSKFKAAVKAQTGQDFPTCAYEQLWGAICAVFNSWMNERAILYRKMEGI PDEWGTAVSVQAMVFGNMGDTSATGVCFSRDAGNGEDLFNGEYLINAQGEDVVAGIRTPQQITKIGSQRWAERAGISEEE RIAKYPSMEEAMPEIYKQLDAIQEKLEDHYRDMQDMEFTVQEGKLWFLQTRNGKRTGAAMVKIAIDLLHQGMIDEKTALN RIEPNKLDELLHPVFDKKAEKQAKVWVKGLPASPGAATGQIVFFADDAAKWHADGKKVVMVRIETSPEDLAGMAVAEGIL TARGGMTSHAAVVARGMGKCCVSGAGALNIDYKNKTVDVDGVTLKEGDYISINGTTGEVYVGQVETKAAELSGDFAELMA LADKYTKLQVRTNADTPHDASIARSFGAVGIGLCRTEHMFFEGEKIKAMREMILAEDAEGRKKALAKILPYQKEDFKGIF KAMAGCPVTVRLLDPPLHEFVPHDLKGQEEMAETMGVSVKEIQKRVESLCEHNPMLGHRGCRLGNTYPEITEMQTRAILG AALDLKKEGIEAKPEIMVPLTGILYEFKEQEKVIRTAAEELFKEVGDRIEFKVGTMIEIPRAALTADRIASSAEFFSFGT NDLTQMTFGYSRDDIASFLPVYLEKKILKVDPFQVLDQNGVGQLVRMATEKGRAIRPDLKCGICGEHGGEPSSVKFCHKV GLNYVSCSPFRVPIARIAAAQAALED
Sequences:
>Translated_906_residues MERKRVYTFGNGKAEGKADMRNLLGGKGANLAEMNLIGVPVPPGFTITTEVCIEYYELGKDKVVELLKADVEKAIANIET LMNSKFGDVANPLLVSVRSGARASMPGMMDTILNLGLNDEVVEGLSRKTGNARFAWDSYRRFVQMYGDVVLGMKPTSKED IDPFEAIIEEVKKAKGVKLDNELDVEDLKTLVSKFKAAVKAQTGQDFPTCAYEQLWGAICAVFNSWMNERAILYRKMEGI PDEWGTAVSVQAMVFGNMGDTSATGVCFSRDAGNGEDLFNGEYLINAQGEDVVAGIRTPQQITKIGSQRWAERAGISEEE RIAKYPSMEEAMPEIYKQLDAIQEKLEDHYRDMQDMEFTVQEGKLWFLQTRNGKRTGAAMVKIAIDLLHQGMIDEKTALN RIEPNKLDELLHPVFDKKAEKQAKVWVKGLPASPGAATGQIVFFADDAAKWHADGKKVVMVRIETSPEDLAGMAVAEGIL TARGGMTSHAAVVARGMGKCCVSGAGALNIDYKNKTVDVDGVTLKEGDYISINGTTGEVYVGQVETKAAELSGDFAELMA LADKYTKLQVRTNADTPHDASIARSFGAVGIGLCRTEHMFFEGEKIKAMREMILAEDAEGRKKALAKILPYQKEDFKGIF KAMAGCPVTVRLLDPPLHEFVPHDLKGQEEMAETMGVSVKEIQKRVESLCEHNPMLGHRGCRLGNTYPEITEMQTRAILG AALDLKKEGIEAKPEIMVPLTGILYEFKEQEKVIRTAAEELFKEVGDRIEFKVGTMIEIPRAALTADRIASSAEFFSFGT NDLTQMTFGYSRDDIASFLPVYLEKKILKVDPFQVLDQNGVGQLVRMATEKGRAIRPDLKCGICGEHGGEPSSVKFCHKV GLNYVSCSPFRVPIARIAAAQAALED >Mature_906_residues MERKRVYTFGNGKAEGKADMRNLLGGKGANLAEMNLIGVPVPPGFTITTEVCIEYYELGKDKVVELLKADVEKAIANIET LMNSKFGDVANPLLVSVRSGARASMPGMMDTILNLGLNDEVVEGLSRKTGNARFAWDSYRRFVQMYGDVVLGMKPTSKED IDPFEAIIEEVKKAKGVKLDNELDVEDLKTLVSKFKAAVKAQTGQDFPTCAYEQLWGAICAVFNSWMNERAILYRKMEGI PDEWGTAVSVQAMVFGNMGDTSATGVCFSRDAGNGEDLFNGEYLINAQGEDVVAGIRTPQQITKIGSQRWAERAGISEEE RIAKYPSMEEAMPEIYKQLDAIQEKLEDHYRDMQDMEFTVQEGKLWFLQTRNGKRTGAAMVKIAIDLLHQGMIDEKTALN RIEPNKLDELLHPVFDKKAEKQAKVWVKGLPASPGAATGQIVFFADDAAKWHADGKKVVMVRIETSPEDLAGMAVAEGIL TARGGMTSHAAVVARGMGKCCVSGAGALNIDYKNKTVDVDGVTLKEGDYISINGTTGEVYVGQVETKAAELSGDFAELMA LADKYTKLQVRTNADTPHDASIARSFGAVGIGLCRTEHMFFEGEKIKAMREMILAEDAEGRKKALAKILPYQKEDFKGIF KAMAGCPVTVRLLDPPLHEFVPHDLKGQEEMAETMGVSVKEIQKRVESLCEHNPMLGHRGCRLGNTYPEITEMQTRAILG AALDLKKEGIEAKPEIMVPLTGILYEFKEQEKVIRTAAEELFKEVGDRIEFKVGTMIEIPRAALTADRIASSAEFFSFGT NDLTQMTFGYSRDDIASFLPVYLEKKILKVDPFQVLDQNGVGQLVRMATEKGRAIRPDLKCGICGEHGGEPSSVKFCHKV GLNYVSCSPFRVPIARIAAAQAALED
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=460, Percent_Identity=26.304347826087, Blast_Score=112, Evalue=9e-26, Organism=Escherichia coli, GI1789193, Length=487, Percent_Identity=24.6406570841889, Blast_Score=90, Evalue=6e-19, Organism=Escherichia coli, GI1788726, Length=445, Percent_Identity=22.6966292134831, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI48994992, Length=444, Percent_Identity=23.1981981981982, Blast_Score=76, Evalue=1e-14,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 99629; Mature: 99629
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERKRVYTFGNGKAEGKADMRNLLGGKGANLAEMNLIGVPVPPGFTITTEVCIEYYELGK CCCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEHHHHHHHHHHCCH DKVVELLKADVEKAIANIETLMNSKFGDVANPLLVSVRSGARASMPGMMDTILNLGLNDE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHCCCCHH VVEGLSRKTGNARFAWDSYRRFVQMYGDVVLGMKPTSKEDIDPFEAIIEEVKKAKGVKLD HHHHHHHCCCCCEEEHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC NELDVEDLKTLVSKFKAAVKAQTGQDFPTCAYEQLWGAICAVFNSWMNERAILYRKMEGI CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PDEWGTAVSVQAMVFGNMGDTSATGVCFSRDAGNGEDLFNGEYLINAQGEDVVAGIRTPQ CCCCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEECCCCHH QITKIGSQRWAERAGISEEERIAKYPSMEEAMPEIYKQLDAIQEKLEDHYRDMQDMEFTV HHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEE QEGKLWFLQTRNGKRTGAAMVKIAIDLLHQGMIDEKTALNRIEPNKLDELLHPVFDKKAE ECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHH KQAKVWVKGLPASPGAATGQIVFFADDAAKWHADGKKVVMVRIETSPEDLAGMAVAEGIL HHHHHEEECCCCCCCCCCCEEEEEECCCHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHH TARGGMTSHAAVVARGMGKCCVSGAGALNIDYKNKTVDVDGVTLKEGDYISINGTTGEVY HHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCEEECCCCEEEEECCCCEEE VGQVETKAAELSGDFAELMALADKYTKLQVRTNADTPHDASIARSFGAVGIGLCRTEHMF EEEEHHHHHHHCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHE FEGEKIKAMREMILAEDAEGRKKALAKILPYQKEDFKGIFKAMAGCPVTVRLLDPPLHEF ECCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHH VPHDLKGQEEMAETMGVSVKEIQKRVESLCEHNPMLGHRGCRLGNTYPEITEMQTRAILG CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH AALDLKKEGIEAKPEIMVPLTGILYEFKEQEKVIRTAAEELFKEVGDRIEFKVGTMIEIP HHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECC RAALTADRIASSAEFFSFGTNDLTQMTFGYSRDDIASFLPVYLEKKILKVDPFQVLDQNG HHHHHHHHHHCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCC VGQLVRMATEKGRAIRPDLKCGICGEHGGEPSSVKFCHKVGLNYVSCSPFRVPIARIAAA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHH QAALED HHHCCC >Mature Secondary Structure MERKRVYTFGNGKAEGKADMRNLLGGKGANLAEMNLIGVPVPPGFTITTEVCIEYYELGK CCCCEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEHHHHHHHHHHCCH DKVVELLKADVEKAIANIETLMNSKFGDVANPLLVSVRSGARASMPGMMDTILNLGLNDE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHCCCCHH VVEGLSRKTGNARFAWDSYRRFVQMYGDVVLGMKPTSKEDIDPFEAIIEEVKKAKGVKLD HHHHHHHCCCCCEEEHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC NELDVEDLKTLVSKFKAAVKAQTGQDFPTCAYEQLWGAICAVFNSWMNERAILYRKMEGI CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PDEWGTAVSVQAMVFGNMGDTSATGVCFSRDAGNGEDLFNGEYLINAQGEDVVAGIRTPQ CCCCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEECCCCHH QITKIGSQRWAERAGISEEERIAKYPSMEEAMPEIYKQLDAIQEKLEDHYRDMQDMEFTV HHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEE QEGKLWFLQTRNGKRTGAAMVKIAIDLLHQGMIDEKTALNRIEPNKLDELLHPVFDKKAE ECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHH KQAKVWVKGLPASPGAATGQIVFFADDAAKWHADGKKVVMVRIETSPEDLAGMAVAEGIL HHHHHEEECCCCCCCCCCCEEEEEECCCHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHH TARGGMTSHAAVVARGMGKCCVSGAGALNIDYKNKTVDVDGVTLKEGDYISINGTTGEVY HHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCEEECCCCEEEEECCCCEEE VGQVETKAAELSGDFAELMALADKYTKLQVRTNADTPHDASIARSFGAVGIGLCRTEHMF EEEEHHHHHHHCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHE FEGEKIKAMREMILAEDAEGRKKALAKILPYQKEDFKGIFKAMAGCPVTVRLLDPPLHEF ECCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHH VPHDLKGQEEMAETMGVSVKEIQKRVESLCEHNPMLGHRGCRLGNTYPEITEMQTRAILG CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH AALDLKKEGIEAKPEIMVPLTGILYEFKEQEKVIRTAAEELFKEVGDRIEFKVGTMIEIP HHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECC RAALTADRIASSAEFFSFGTNDLTQMTFGYSRDDIASFLPVYLEKKILKVDPFQVLDQNG HHHHHHHHHHCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCC VGQLVRMATEKGRAIRPDLKCGICGEHGGEPSSVKFCHKVGLNYVSCSPFRVPIARIAAA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHH QAALED HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2176881; 6257292; 11695893; 11468288; 8610096; 9753432 [H]