| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is amyA [C]
Identifier: 150007578
GI number: 150007578
Start: 1072620
End: 1074068
Strand: Direct
Name: amyA [C]
Synonym: BDI_0931
Alternate gene names: 150007578
Gene position: 1072620-1074068 (Clockwise)
Preceding gene: 150007575
Following gene: 150007581
Centisome position: 22.29
GC content: 48.1
Gene sequence:
>1449_bases ATGGAAAATGGAGTAATGATGCAGTATTTCGAATGGAATCTGCCGAACGATGGAATGCTGTGGAAACGGCTGAAGGATGA TGCTTCGCATTTACATGAGATCGGGATCAGCGCCGTATGGATTCCACCCGCTTACAAAGGCCATGAGCAAGCGGACGAGG GGTATGGAACCTATGATCTATATGATTTGGGGGAGTTTGACCAAAAAGGGACCATACGTACCAAGTATGGAACTAAACAG GAACTTCAAGAAATGATCGAGGAACTTCACCGGAACCAGATTGGCGTATATCTGGATGCCGTGATGAACCATAAGGCGGG AGCCGATTATACCGAGTGGTTTATGGCGCAAGAGGTAGATCCTGGGCAACGGGAAAACGCTACCAGCGAACCCCATGAGA TAGAGGGCTGGACCGGCTTCGACTTCCCGGGGCGTGGCAATATGTATTCTAATTTTAAATGGCATTGGTTTCATTTCTCC GGGACGGACTATGATGTGTCCCGCAAGAAGGAAGGTATATTCCAGATTCTGGGAGAGGGAAAACATTGGAGTGAGGGAGT CGATGATGAGAATGGAAATTATGACTATCTCATGTTCGCCGATCTGGATTTCGATAACCCCGAAGTCGTGCGTGAGATGC AGGACTGGGGGATCTGGGTATCGAACGAACTAAACTTGGACGGTATGCGCCTTGACGCGATCAAGCATATGAACGACCAG TTTATCAAGCATTTTCTGGAGGCGGTGAGAGCGGATCGGGGAGAGGGTTTCTACGCTGTCGGGGAATATTGGAAAAACGA TACCGAATCGTTGGAGGCTTACCTGTCGCAAGTAGAATATAACGTGGATTTGTTTGACGTAGCCTTACATTATAACTTGA ATGAGGCTTCCGAGAAAGGTCGTGACTATGATTTACGCGATCTATTAAAAGGGACCTTGGTCGAGATATGCCCGGATCAA GCCGTCACCTTCGTGGATAACCATGATTCCCAGAAAAACAGTTCTTTGGAGTCGCAGGTAAAGGATTGGTTCAAACCTTC CGCCTACGGTTTGATCCTGTTGATGAAGAAAGGGTATCCGTGCATCTTTTATGGGGATTATTATGGCGTAAAAGGGAAGA AATCTCCCCATCGTAAGGTATTGGATATGCTATTGCGTGCCCGGAAAGAATATGCGTACGGGGAAGAGGTGGATTATTTT GATCATCCGAACACGATTGGCTTCGTACGCTTGGGAGATTCGGGACATGCTGATTCGGGCTTGGCGTTGGTTATCTCGAA CGGGGAAGATGGAGAGAAAACAATGTCTGTGGGGGAGAACCGGAAAGGCGAGGTATGGCATGAGATCACAGGCTCGGTAA AAGATACCGTGGCGATTGATGAGGAAGGGAAAGGCCGTTTCCTTGTCAAGGGAGGCAAATTGGCTGTTTGGGTCAAGGTC AAGGCTTAA
Upstream 100 bases:
>100_bases TATTCTTTAGTTTTTTACTATAACAAAAGGAGGTGGTGGTTAGTTTCAGCAACTTATGACGCTTGAGAAGTGTTGTTTTA TCAACAAATAGAAGAAACAT
Downstream 100 bases:
>100_bases CGGATGCTTTACTTGACCTCGAATTGTATTTTCTTCTGGTTCCCCTCGTTGTCGATGAGGGTAAGGAGATGTTTTCCTTG GCTCACGGAGCAACTGATCT
Product: cytoplasmic alpha-amylase
Products: NA
Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MENGVMMQYFEWNLPNDGMLWKRLKDDASHLHEIGISAVWIPPAYKGHEQADEGYGTYDLYDLGEFDQKGTIRTKYGTKQ ELQEMIEELHRNQIGVYLDAVMNHKAGADYTEWFMAQEVDPGQRENATSEPHEIEGWTGFDFPGRGNMYSNFKWHWFHFS GTDYDVSRKKEGIFQILGEGKHWSEGVDDENGNYDYLMFADLDFDNPEVVREMQDWGIWVSNELNLDGMRLDAIKHMNDQ FIKHFLEAVRADRGEGFYAVGEYWKNDTESLEAYLSQVEYNVDLFDVALHYNLNEASEKGRDYDLRDLLKGTLVEICPDQ AVTFVDNHDSQKNSSLESQVKDWFKPSAYGLILLMKKGYPCIFYGDYYGVKGKKSPHRKVLDMLLRARKEYAYGEEVDYF DHPNTIGFVRLGDSGHADSGLALVISNGEDGEKTMSVGENRKGEVWHEITGSVKDTVAIDEEGKGRFLVKGGKLAVWVKV KA
Sequences:
>Translated_482_residues MENGVMMQYFEWNLPNDGMLWKRLKDDASHLHEIGISAVWIPPAYKGHEQADEGYGTYDLYDLGEFDQKGTIRTKYGTKQ ELQEMIEELHRNQIGVYLDAVMNHKAGADYTEWFMAQEVDPGQRENATSEPHEIEGWTGFDFPGRGNMYSNFKWHWFHFS GTDYDVSRKKEGIFQILGEGKHWSEGVDDENGNYDYLMFADLDFDNPEVVREMQDWGIWVSNELNLDGMRLDAIKHMNDQ FIKHFLEAVRADRGEGFYAVGEYWKNDTESLEAYLSQVEYNVDLFDVALHYNLNEASEKGRDYDLRDLLKGTLVEICPDQ AVTFVDNHDSQKNSSLESQVKDWFKPSAYGLILLMKKGYPCIFYGDYYGVKGKKSPHRKVLDMLLRARKEYAYGEEVDYF DHPNTIGFVRLGDSGHADSGLALVISNGEDGEKTMSVGENRKGEVWHEITGSVKDTVAIDEEGKGRFLVKGGKLAVWVKV KA >Mature_482_residues MENGVMMQYFEWNLPNDGMLWKRLKDDASHLHEIGISAVWIPPAYKGHEQADEGYGTYDLYDLGEFDQKGTIRTKYGTKQ ELQEMIEELHRNQIGVYLDAVMNHKAGADYTEWFMAQEVDPGQRENATSEPHEIEGWTGFDFPGRGNMYSNFKWHWFHFS GTDYDVSRKKEGIFQILGEGKHWSEGVDDENGNYDYLMFADLDFDNPEVVREMQDWGIWVSNELNLDGMRLDAIKHMNDQ FIKHFLEAVRADRGEGFYAVGEYWKNDTESLEAYLSQVEYNVDLFDVALHYNLNEASEKGRDYDLRDLLKGTLVEICPDQ AVTFVDNHDSQKNSSLESQVKDWFKPSAYGLILLMKKGYPCIFYGDYYGVKGKKSPHRKVLDMLLRARKEYAYGEEVDYF DHPNTIGFVRLGDSGHADSGLALVISNGEDGEKTMSVGENRKGEVWHEITGSVKDTVAIDEEGKGRFLVKGGKLAVWVKV KA
Specific function: Unknown
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Escherichia coli, GI1788236, Length=492, Percent_Identity=43.0894308943089, Blast_Score=400, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013776 - InterPro: IPR015237 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR006589 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF09154 DUF1939 [H]
EC number: =3.2.1.1 [H]
Molecular weight: Translated: 55374; Mature: 55374
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENGVMMQYFEWNLPNDGMLWKRLKDDASHLHEIGISAVWIPPAYKGHEQADEGYGTYDL CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEE YDLGEFDQKGTIRTKYGTKQELQEMIEELHRNQIGVYLDAVMNHKAGADYTEWFMAQEVD EECCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCHHHHHHHHCCC PGQRENATSEPHEIEGWTGFDFPGRGNMYSNFKWHWFHFSGTDYDVSRKKEGIFQILGEG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCHHHHHCCC KHWSEGVDDENGNYDYLMFADLDFDNPEVVREMQDWGIWVSNELNLDGMRLDAIKHMNDQ CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCEEEECCCCCCCEEHHHHHHHHHH FIKHFLEAVRADRGEGFYAVGEYWKNDTESLEAYLSQVEYNVDLFDVALHYNLNEASEKG HHHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHCC RDYDLRDLLKGTLVEICPDQAVTFVDNHDSQKNSSLESQVKDWFKPSAYGLILLMKKGYP CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCC CIFYGDYYGVKGKKSPHRKVLDMLLRARKEYAYGEEVDYFDHPNTIGFVRLGDSGHADSG EEEECCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCC LALVISNGEDGEKTMSVGENRKGEVWHEITGSVKDTVAIDEEGKGRFLVKGGKLAVWVKV EEEEEECCCCCHHHHHCCCCCCCCHHHHHCCCCCCEEEECCCCCCEEEEECCCEEEEEEE KA EC >Mature Secondary Structure MENGVMMQYFEWNLPNDGMLWKRLKDDASHLHEIGISAVWIPPAYKGHEQADEGYGTYDL CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEE YDLGEFDQKGTIRTKYGTKQELQEMIEELHRNQIGVYLDAVMNHKAGADYTEWFMAQEVD EECCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCHHHHHHHHCCC PGQRENATSEPHEIEGWTGFDFPGRGNMYSNFKWHWFHFSGTDYDVSRKKEGIFQILGEG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCHHHHHCCC KHWSEGVDDENGNYDYLMFADLDFDNPEVVREMQDWGIWVSNELNLDGMRLDAIKHMNDQ CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCEEEECCCCCCCEEHHHHHHHHHH FIKHFLEAVRADRGEGFYAVGEYWKNDTESLEAYLSQVEYNVDLFDVALHYNLNEASEKG HHHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHCC RDYDLRDLLKGTLVEICPDQAVTFVDNHDSQKNSSLESQVKDWFKPSAYGLILLMKKGYP CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCC CIFYGDYYGVKGKKSPHRKVLDMLLRARKEYAYGEEVDYFDHPNTIGFVRLGDSGHADSG EEEECCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCC LALVISNGEDGEKTMSVGENRKGEVWHEITGSVKDTVAIDEEGKGRFLVKGGKLAVWVKV EEEEEECCCCCHHHHHCCCCCCCCHHHHHCCCCCCEEEECCCCCCEEEEECCCEEEEEEE KA EC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6185474; 6170539; 2830166; 6156671; 10924103 [H]