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The map label for this gene is soxS [C]

Identifier: 150007415

GI number: 150007415

Start: 896053

End: 896934

Strand: Reverse

Name: soxS [C]

Synonym: BDI_0766

Alternate gene names: 150007415

Gene position: 896934-896053 (Counterclockwise)

Preceding gene: 150007416

Following gene: 150007414

Centisome position: 18.64

GC content: 38.44

Gene sequence:

>882_bases
ATGGATAAACAGTTCCTCTGCCTTGATTCACCTACAGACTTTATGGTTGGTAAATACATATCCGCCGATGAACTCAAGGA
GTTTATAAATATTCCTTGTAAGATAAAAGCCGGGGTCTTTATCCTTTGCATGGAAGGGCAAATACGCTCAACTATCAATA
TGTCAGAATTGACCACCTCGAAACTCAATGTTGTAACGCTATTGCCCAATAGTCGCATACAAATACATGAGATATCCCCC
GACATCTTGATCTATTTCATAGCGTTCTCTTTCGATTTTATGTGTTACGCAAATTTTATCAAGAGCACGATGGGTTATCT
ACTTATGATTTACAGGTATCCGATTATAAAAATATCCCAAAACAGGGCCAACCTGATCACGAACTTCTACGAGCTTCTCT
ATCAATATGCCGTATATCCCGATATCTTGAACAATAAAGAGATGATAAAGGCCATTTTCATGATGTGTAGTCAAGGTATC
GCAGAAATATACAGTAAAAATTACCCATTAGAGAAACAGGAACTTACACGTCCGTTACAAATCTATCAAGAGTTCCTAAA
TATGGTATTAAGATACTATACAAAAGAGCATAACGTATCGTTTTATGCCGAGAAGTTGGGCCTCACGTTCTCCTATTTCT
CGACATCCATCAAAAAAGCGATCGGCGAGACTCCCCAAGAGATCCTCACGCAAACAATAATCATAGACGCTAAGACACAG
TTAAAAGGGACTAACCAAGAAATCAAAAACATAGCGATGGACCTCGGCTTTAATAATCTATCGTTCTTTAATAAGTTCTT
CCGTCGAAATGTAGGCATGACTCCACAAGAATACAGGGGTAAATCGTATACCTATTCTTGTTACCAGAAAACATCCGACT
AG

Upstream 100 bases:

>100_bases
GTCTTGGCTAACTATTTTTTGGGATAATATGTTCCATATTTCCTTTTACAACATTTGAGTTTCAATTAATATTTATATTT
GACGTCAAAAATCTTACAAT

Downstream 100 bases:

>100_bases
CCGAAAGCAAAAACGGAACATATTATCAAAAAGAAGAATTTCAAGGGTACCTTTTATAATTTTTACTTTTGTAGAATAAT
ATAAAAAGACATACGATGGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcription Regulator; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; Bacterial Regulatory Helix-Turn-Helix Protein; AraC-Type Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; AraC-Family Transcriptional Regulator; Phosphomethylpyrimidine Kinase

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MDKQFLCLDSPTDFMVGKYISADELKEFINIPCKIKAGVFILCMEGQIRSTINMSELTTSKLNVVTLLPNSRIQIHEISP
DILIYFIAFSFDFMCYANFIKSTMGYLLMIYRYPIIKISQNRANLITNFYELLYQYAVYPDILNNKEMIKAIFMMCSQGI
AEIYSKNYPLEKQELTRPLQIYQEFLNMVLRYYTKEHNVSFYAEKLGLTFSYFSTSIKKAIGETPQEILTQTIIIDAKTQ
LKGTNQEIKNIAMDLGFNNLSFFNKFFRRNVGMTPQEYRGKSYTYSCYQKTSD

Sequences:

>Translated_293_residues
MDKQFLCLDSPTDFMVGKYISADELKEFINIPCKIKAGVFILCMEGQIRSTINMSELTTSKLNVVTLLPNSRIQIHEISP
DILIYFIAFSFDFMCYANFIKSTMGYLLMIYRYPIIKISQNRANLITNFYELLYQYAVYPDILNNKEMIKAIFMMCSQGI
AEIYSKNYPLEKQELTRPLQIYQEFLNMVLRYYTKEHNVSFYAEKLGLTFSYFSTSIKKAIGETPQEILTQTIIIDAKTQ
LKGTNQEIKNIAMDLGFNNLSFFNKFFRRNVGMTPQEYRGKSYTYSCYQKTSD
>Mature_293_residues
MDKQFLCLDSPTDFMVGKYISADELKEFINIPCKIKAGVFILCMEGQIRSTINMSELTTSKLNVVTLLPNSRIQIHEISP
DILIYFIAFSFDFMCYANFIKSTMGYLLMIYRYPIIKISQNRANLITNFYELLYQYAVYPDILNNKEMIKAIFMMCSQGI
AEIYSKNYPLEKQELTRPLQIYQEFLNMVLRYYTKEHNVSFYAEKLGLTFSYFSTSIKKAIGETPQEILTQTIIIDAKTQ
LKGTNQEIKNIAMDLGFNNLSFFNKFFRRNVGMTPQEYRGKSYTYSCYQKTSD

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34232; Mature: 34232

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQFLCLDSPTDFMVGKYISADELKEFINIPCKIKAGVFILCMEGQIRSTINMSELTTS
CCCCEEEECCCCCHHHHCCCCHHHHHHHHCCCEEEECCEEEEEECCCHHHHCCHHHHHHC
KLNVVTLLPNSRIQIHEISPDILIYFIAFSFDFMCYANFIKSTMGYLLMIYRYPIIKISQ
CCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
NRANLITNFYELLYQYAVYPDILNNKEMIKAIFMMCSQGIAEIYSKNYPLEKQELTRPLQ
CHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IYQEFLNMVLRYYTKEHNVSFYAEKLGLTFSYFSTSIKKAIGETPQEILTQTIIIDAKTQ
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHEEECHHH
LKGTNQEIKNIAMDLGFNNLSFFNKFFRRNVGMTPQEYRGKSYTYSCYQKTSD
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEHCCCCCC
>Mature Secondary Structure
MDKQFLCLDSPTDFMVGKYISADELKEFINIPCKIKAGVFILCMEGQIRSTINMSELTTS
CCCCEEEECCCCCHHHHCCCCHHHHHHHHCCCEEEECCEEEEEECCCHHHHCCHHHHHHC
KLNVVTLLPNSRIQIHEISPDILIYFIAFSFDFMCYANFIKSTMGYLLMIYRYPIIKISQ
CCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
NRANLITNFYELLYQYAVYPDILNNKEMIKAIFMMCSQGIAEIYSKNYPLEKQELTRPLQ
CHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IYQEFLNMVLRYYTKEHNVSFYAEKLGLTFSYFSTSIKKAIGETPQEILTQTIIIDAKTQ
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHEEECHHH
LKGTNQEIKNIAMDLGFNNLSFFNKFFRRNVGMTPQEYRGKSYTYSCYQKTSD
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA