Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 150007199

GI number: 150007199

Start: 645764

End: 646432

Strand: Reverse

Name: yggS [C]

Synonym: BDI_0544

Alternate gene names: 150007199

Gene position: 646432-645764 (Counterclockwise)

Preceding gene: 150007200

Following gene: 150007198

Centisome position: 13.44

GC content: 47.09

Gene sequence:

>669_bases
ATGAGTATCGCTCAAAACATAGTACAACTGAAAACGTCGCTCCCGCAAGGGGTGACGTTGGTTGCCGTCTCTAAGTTTCA
CCCGGTGGAGGCTCTATGGGAGGCTTACAACGCCGGACAGCGGGTGTTTGGCGAAAGCAGGGCACAGGAACTGAGCGCCA
AGCAAAAAGTACTACCTGAGGATATCGAATGGCATTTTATCGGCCCGTTACAAAGCAATAAGGTAAAAGATATCGCTCCT
TTTATTCATTTGATCCATAGCATAGATTCCTTGAAGCTTTTGGCTGAGGTGAATAAACAAGCGAAAAAACACAACCGCAC
GATCCGGGTATTATTGGAGATCCATGTGGCGCAAGAGGAATCCAAGCACGGACTCAGTCCTGAGGAATGCAAGGAGTTGT
TGCGTGACGAGTCCTTGGCCGAATTCCAGCATATTCGTATTTGCGGATTGATGGGTATGGCTACCAATACCGATGATACG
GGGTTGATACGGGAAGAATTCCGCAAGATCCATGATTTATTTATCGAACTGAAAGAGACGCTCTGTAAAGATAATGTCGA
TTTCAAGGAGATATCCATGGGGATGAGCCACGATTACCCGATCGCTATCCAAGAAGGAAGCACCTTGATACGGGTGGGTA
CCAGTATCTTTGGCGAACGGGAATATTAA

Upstream 100 bases:

>100_bases
GTATTCCCATTCGACGCAAACAGTATTCCCGGCGAGAAGAAAAGTGGCGAGGAACTGATAGCGGAGCAAAAACAACAAGC
TGAACAAAGAGGATAAAAAC

Downstream 100 bases:

>100_bases
AGTAATTATTAAATCTAAATATAGGCAACATGATTGACATTAAAACCCAATACGCGGGGTTAACACTTCGCAATCCGATT
ATCGTCGGGAGCTCCGGACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSIAQNIVQLKTSLPQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQELSAKQKVLPEDIEWHFIGPLQSNKVKDIAP
FIHLIHSIDSLKLLAEVNKQAKKHNRTIRVLLEIHVAQEESKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDT
GLIREEFRKIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGEREY

Sequences:

>Translated_222_residues
MSIAQNIVQLKTSLPQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQELSAKQKVLPEDIEWHFIGPLQSNKVKDIAP
FIHLIHSIDSLKLLAEVNKQAKKHNRTIRVLLEIHVAQEESKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDT
GLIREEFRKIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGEREY
>Mature_221_residues
SIAQNIVQLKTSLPQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQELSAKQKVLPEDIEWHFIGPLQSNKVKDIAPF
IHLIHSIDSLKLLAEVNKQAKKHNRTIRVLLEIHVAQEESKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDTG
LIREEFRKIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGEREY

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=216, Percent_Identity=38.4259259259259, Blast_Score=127, Evalue=5e-30,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=36.3247863247863, Blast_Score=133, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=221, Percent_Identity=33.9366515837104, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=36.3207547169811, Blast_Score=113, Evalue=3e-26,
Organism=Drosophila melanogaster, GI45550861, Length=215, Percent_Identity=37.2093023255814, Blast_Score=119, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25213; Mature: 25082

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAQNIVQLKTSLPQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQELSAKQKVLPE
CCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHNRTIRVLLEIHVAQEE
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFRKIHDLFIELKET
HHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGEREY
HHCCCCCHHHHHCCCCCCCCEEECCCCEEEEECHHHHCCCCC
>Mature Secondary Structure 
SIAQNIVQLKTSLPQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQELSAKQKVLPE
CHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHNRTIRVLLEIHVAQEE
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFRKIHDLFIELKET
HHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGEREY
HHCCCCCHHHHHCCCCCCCCEEECCCCEEEEECHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]