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The map label for this gene is gcdB [H]

Identifier: 150006829

GI number: 150006829

Start: 171295

End: 172455

Strand: Reverse

Name: gcdB [H]

Synonym: BDI_0160

Alternate gene names: 150006829

Gene position: 172455-171295 (Counterclockwise)

Preceding gene: 150006830

Following gene: 150006828

Centisome position: 3.58

GC content: 46.08

Gene sequence:

>1161_bases
ATGCAAGAGAGCTTTTTAACATTCTTAGGTGAGAACTTACAACTGTTCCTTACCTATACAGGTGTATACAACGCTACTCC
GGGACATCTCATCATGATTCTGGTAGGTCTGTTGTTTATATTCCTGGCGATTAAATATGAGTTTGAACCGATGCTTTTGA
TCCCTATCGGATTCGGTATCTTGATCGGTAATATCCCTTTCAAGGACGCAGGTCTTCAAGTAGGTATTTATGAGCAAGGG
TCTGTACTGAACATCCTCTATCAGGGTGTGACCTCTGGATGGTATCCGCCATTGATCTTCCTCGGCATCGGGGCCATGAC
CGACTTCTCCGCATTGATCTCCAATCCAAAGTTGATGTTGATCGGTGCAGCGGCTCAGTTCGGTATCTTTGGTGCTTATA
CGATTGCTCTTCAAATGGGATTTGAGCCGAACCAAGCAGGTGCTATCGGTATTATCGGTGGTGCTGACGGTCCGACGGCT
ATCTTCCTTTCTTCTAAGTTAGCGCCAAACTTAATGGGTGCGATTGCGGTATCCGCCTACTCATACATGGCGTTGGTTCC
TATTATCCAACCACCGTTCATGAGATTGCTTACGACTAAGAAAGAGCGTTTGATCCGTATGAAACCGCCGAGAGCCGTTT
CTTCCACGGAAAAAATTATCTTCCCGATCGTTGGCTTGTTGCTTACTTGCTTCTTGGTTCCGTCCGGTTTACCATTGTTA
GGTATGCTATTCTTCGGAAACTTATTGAAAGAAAGTGGCGTGACTCGTCGTTTGGCAGAGACTGCTCGTGGTCCGCTGAT
CGATACAATCACGATCTTATTGGGTATCACGGTAGGTGCTTCTACCCAAGCTACACAGTTCTTGACATTGAACTCTATCA
AGATCTTCGGTCTAGGTGCGTTATCATTCGTGATCGCTACTTGCGCCGGTGTATTGTTCGTTAAGTTATTCAATTTAATA
TTGAAAGACGGCAATAAGATCAATCCGCTTATCGGTAACGCCGGTGTATCTGCTGTTCCCGACTCAGCTCGTATCTCTCA
AGTCGTAGGTTTGGAATACGACCCGACCAATTACTTGTTGATGCACGCTATGGGTCCGAACGTAGCAGGTGTAATCGGTT
CCGCTGTAGCTGCCGGTATCTTGCTAGGATTCCTTGGTTAA

Upstream 100 bases:

>100_bases
AACATCAACGCAGACCGTGACGGTAAGATTATAGAAATTAAAGTACACAAGGGAGACTCTGTGCTAGAAGGTGCTGATCT
CGTAGTAATCGGATAAGACT

Downstream 100 bases:

>100_bases
TAAAACAACTATCTATATTAAAAAAGGCGAGGTCCGAAAGGATCCCGCCTTTTTATGTTATTGTTCTCAGTTAGTTTGCT
CTATAGGAACCGGAGTAATC

Product: oxaloacetate decarboxylase subunit beta

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MQESFLTFLGENLQLFLTYTGVYNATPGHLIMILVGLLFIFLAIKYEFEPMLLIPIGFGILIGNIPFKDAGLQVGIYEQG
SVLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLMLIGAAAQFGIFGAYTIALQMGFEPNQAGAIGIIGGADGPTA
IFLSSKLAPNLMGAIAVSAYSYMALVPIIQPPFMRLLTTKKERLIRMKPPRAVSSTEKIIFPIVGLLLTCFLVPSGLPLL
GMLFFGNLLKESGVTRRLAETARGPLIDTITILLGITVGASTQATQFLTLNSIKIFGLGALSFVIATCAGVLFVKLFNLI
LKDGNKINPLIGNAGVSAVPDSARISQVVGLEYDPTNYLLMHAMGPNVAGVIGSAVAAGILLGFLG

Sequences:

>Translated_386_residues
MQESFLTFLGENLQLFLTYTGVYNATPGHLIMILVGLLFIFLAIKYEFEPMLLIPIGFGILIGNIPFKDAGLQVGIYEQG
SVLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLMLIGAAAQFGIFGAYTIALQMGFEPNQAGAIGIIGGADGPTA
IFLSSKLAPNLMGAIAVSAYSYMALVPIIQPPFMRLLTTKKERLIRMKPPRAVSSTEKIIFPIVGLLLTCFLVPSGLPLL
GMLFFGNLLKESGVTRRLAETARGPLIDTITILLGITVGASTQATQFLTLNSIKIFGLGALSFVIATCAGVLFVKLFNLI
LKDGNKINPLIGNAGVSAVPDSARISQVVGLEYDPTNYLLMHAMGPNVAGVIGSAVAAGILLGFLG
>Mature_386_residues
MQESFLTFLGENLQLFLTYTGVYNATPGHLIMILVGLLFIFLAIKYEFEPMLLIPIGFGILIGNIPFKDAGLQVGIYEQG
SVLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLMLIGAAAQFGIFGAYTIALQMGFEPNQAGAIGIIGGADGPTA
IFLSSKLAPNLMGAIAVSAYSYMALVPIIQPPFMRLLTTKKERLIRMKPPRAVSSTEKIIFPIVGLLLTCFLVPSGLPLL
GMLFFGNLLKESGVTRRLAETARGPLIDTITILLGITVGASTQATQFLTLNSIKIFGLGALSFVIATCAGVLFVKLFNLI
LKDGNKINPLIGNAGVSAVPDSARISQVVGLEYDPTNYLLMHAMGPNVAGVIGSAVAAGILLGFLG

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 40894; Mature: 40894

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQESFLTFLGENLQLFLTYTGVYNATPGHLIMILVGLLFIFLAIKYEFEPMLLIPIGFGI
CCCHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEE
LIGNIPFKDAGLQVGIYEQGSVLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLML
EECCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHCCCCEEE
IGAAAQFGIFGAYTIALQMGFEPNQAGAIGIIGGADGPTAIFLSSKLAPNLMGAIAVSAY
EECCHHHHHHEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHH
SYMALVPIIQPPFMRLLTTKKERLIRMKPPRAVSSTEKIIFPIVGLLLTCFLVPSGLPLL
HHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
GMLFFGNLLKESGVTRRLAETARGPLIDTITILLGITVGASTQATQFLTLNSIKIFGLGA
HHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEHHH
LSFVIATCAGVLFVKLFNLILKDGNKINPLIGNAGVSAVPDSARISQVVGLEYDPTNYLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHCCEECCCCEEE
MHAMGPNVAGVIGSAVAAGILLGFLG
EEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQESFLTFLGENLQLFLTYTGVYNATPGHLIMILVGLLFIFLAIKYEFEPMLLIPIGFGI
CCCHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEE
LIGNIPFKDAGLQVGIYEQGSVLNILYQGVTSGWYPPLIFLGIGAMTDFSALISNPKLML
EECCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHCCCCEEE
IGAAAQFGIFGAYTIALQMGFEPNQAGAIGIIGGADGPTAIFLSSKLAPNLMGAIAVSAY
EECCHHHHHHEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHH
SYMALVPIIQPPFMRLLTTKKERLIRMKPPRAVSSTEKIIFPIVGLLLTCFLVPSGLPLL
HHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
GMLFFGNLLKESGVTRRLAETARGPLIDTITILLGITVGASTQATQFLTLNSIKIFGLGA
HHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEHHH
LSFVIATCAGVLFVKLFNLILKDGNKINPLIGNAGVSAVPDSARISQVVGLEYDPTNYLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHCCEECCCCEEE
MHAMGPNVAGVIGSAVAAGILLGFLG
EEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]