| Definition | Bacteroides vulgatus ATCC 8482 chromosome, complete genome. |
|---|---|
| Accession | NC_009614 |
| Length | 5,163,189 |
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The map label for this gene is csxA [H]
Identifier: 150006619
GI number: 150006619
Start: 5095014
End: 5097581
Strand: Reverse
Name: csxA [H]
Synonym: BVU_4139
Alternate gene names: 150006619
Gene position: 5097581-5095014 (Counterclockwise)
Preceding gene: 150006620
Following gene: 150006618
Centisome position: 98.73
GC content: 43.34
Gene sequence:
>2568_bases ATGAAGAAAACATTAAAAGTTTTGATGATGTTAGGATGCTTTCCGATGATGCTCAGTGCAAAGGAGTATAAGAAGTCAGA GAGTCTGAGTCTTGATAAGGGATGGGAGTTCGCCCAGGTCGGCCGGAATGAATGGTTGCCGGCTACGGTGCCCGGAACGG TACATCAGGATTTGATTTCTCATAATAAGCTGCCCAATCCATTTTATGGGATGAATGAGCAAAAAGTGCAGTGGGTGGAG AATGAGGACTGGGTCTATAAAACTACTTTTAATGTGACGGATGAGCAACTCTCGCGGGATGCTGCCTTGTTGATTTTGGA AGGGTTGGATACGTATGCGGATATTTACCTGAACGGCTCTTTGTTGGAACGTACGGACAATATGTTTGTCGGCTATACTC TTCCGGTAAAAGAGGTGTTGCGGAAGGGAGAAAACCATTTGCAGATTCTGTTTCATTCACCTGTCAAGCAAACTTTACCC CAATGGGAAACCAATGGTTTTGATTATCCTGCTGATAATGATCATAGTGATAAGCGGGTTAGTATCTATAGCCGTAAAGC GCCTTACAGTTATGGCTGGGATTGGGGAATCCGCTTGGTAACCAGTGGTATCTGGCGGCCTGTGACACTGACTTTCTATG ATGTGGCACGCATTGATGATTACTATGTACGTCAGGCTTCGGTAACAAAAGATCTGGCGAAAGTTGAAAACCGCCTGACT GTAAACAGTGTTTCTGCAACTCCTCAGAAAGCGGAAGTAACCGTTGCTTATTCTTATAAGGAGGGTGAAAAGGTAACCGA ACAGAAAGAGGTGACATTGCAGCCGGGAACAAACCATATTCTTCTTCCCATAGAGATACGGCAGCCTCATTTATGGATGC CTAATGGTTGGGGGGAACCTGCATTGTATGACTTTGAAGCCGTAATAAAGGTGGATGGTAAAGTGATAGCTTCTCAAAAA GAGCGTATCGGACTCCGTACAATAAAGGTGGTGAAAGAAAAAGACGATCAGGGAGAATCCTTCTATTTTGTAGTCAATGG TGAACCTATGTTTGCCAAAGGCGCGAATTTTATCCCGGATGATGCTTTGCTGCCTAACATTACTGAAGAACGTTACCGCC AGTTGTTCAAGGATGTGAAAGATGCCAATATGAATATGATTCGTGTATGGGGTGGAGGAATTTATGAGGATGATGCTTTT TACCAGGCGGCGGACGAGAATGGAATTTTAGTTTGGCAGGATTTTATTTTTGCCTGCACTACTTATCCGTCCGATCCTGC TTTTATGAAACGGGTAGAGGCCGAGGCGGAATATAATATCAAGCGTTTACGGAACCATGCCAGTCTGGCTATGTGGTGTG GAAACAATGAAATTTATGAAGGTATGCGCTACTGGGGATGGGATAAGAAATACACTGATCCCGGTATTATGGAAGGAATG AAGCAGGGCTATGACAAACTTTTCCGTGAGTTGTTGCCTCGTAAAGTAGCTGAACTTGATCCGGACCGTTTCTATATGCA TGGTTCTCCGTACGAGGCCAATTGGGGACGTCCCGAAAGTTGGAAGATTGCCGACAGCCATAATTGGGGTATCTGGTATG GTCAGAAACCGTTTGAAAGTCTGGATACGGAAATTCCGCGTTTTATGAGTGAGTTTGGTTTTCAGGCATTTCCTGAAATG AAGACGATTGCTACTTTTGCCTCACCGGAAGATTATGCATTGGAATCGGAGGTGATGAATGCTCATCAAAAAGCCACTAT CGGTAATTTCCTCATCAAGAAGACTATGGGACTGTATTATAAAGTGCCTGAAGATTTCGATCAGTTGGTTTATATGGGTT TGGTTTTGCAGGGGGTAGGAGTGCGCCAGGGTTTGGAAGCCCATCGTCGTAACCGTCCCTATTGTATGGGAACTTTATAT TGGCAGCTGAATGACAGCTGGCCGGTCGTTTCCTGGTCGAGCATTGATTATTATGGCAATTGGAAAGCGTTGCATTATCA GGCAAAAAGAGCTTTTGCTCCGGTATTGGTAGATGCTGTCAAGGAAGGGGAGGATTTGAATATTTATGTTATGTCGGACA AACTGGAAGCGGATAAAGAGGTGACTTTATTGTTGCGTGTGATGGATTTTAATGGAAAGGTTCTGACTAAAAAGAGTATC AAGGGCGAGGTTCCGGCCAATGCTTCCACCTTATATTATAAGGAACCTTATGCAGGTATGACAACAAGTCCTCAAAATAC TTTTCTTCTAATGACATTAAAAAATAAGAAAGGTGAGGTTTTATCCGAAGAAATTTATTACTTTAACCACGCAAAAGATC AGGAGCTTCCGAAGACCGAGATCCGCTATAAAGTGAAGCCGATGGATGGAAAATATGAAGTGACTCTGTCTGCCAGACAG CTGGCCAGGGATGTGTTCATAGAGATTCCTGTTCAGGGTGCGAGATTTACTGACAACTTCTTTGACTTGTTGCCGGGACA GACAAAGAAAGTGATTATTACTTCAGATAAACTGAAGAAGAATGAAAAGGTTGATATAACTATTAAGCAATTAAGTGATA CTAACTAA
Upstream 100 bases:
>100_bases GATGGCAGCCATTTACCCGTGCCAATCTGGTAAATGGCGCCGGTTTGCCTGCATCCACATTCCGGGCTGAATAGTATATA AATTAATAAAGATAGGTAAG
Downstream 100 bases:
>100_bases TCAATTAATATCTATTATGAAAACTTTAATGGGCCTTGCAGGGCTGACAATGGCAGGTTTTATGCTTTTATCCTGTAACA CAGAAGTGAAAGAAGCAAAT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 855; Mature: 855
Protein sequence:
>855_residues MKKTLKVLMMLGCFPMMLSAKEYKKSESLSLDKGWEFAQVGRNEWLPATVPGTVHQDLISHNKLPNPFYGMNEQKVQWVE NEDWVYKTTFNVTDEQLSRDAALLILEGLDTYADIYLNGSLLERTDNMFVGYTLPVKEVLRKGENHLQILFHSPVKQTLP QWETNGFDYPADNDHSDKRVSIYSRKAPYSYGWDWGIRLVTSGIWRPVTLTFYDVARIDDYYVRQASVTKDLAKVENRLT VNSVSATPQKAEVTVAYSYKEGEKVTEQKEVTLQPGTNHILLPIEIRQPHLWMPNGWGEPALYDFEAVIKVDGKVIASQK ERIGLRTIKVVKEKDDQGESFYFVVNGEPMFAKGANFIPDDALLPNITEERYRQLFKDVKDANMNMIRVWGGGIYEDDAF YQAADENGILVWQDFIFACTTYPSDPAFMKRVEAEAEYNIKRLRNHASLAMWCGNNEIYEGMRYWGWDKKYTDPGIMEGM KQGYDKLFRELLPRKVAELDPDRFYMHGSPYEANWGRPESWKIADSHNWGIWYGQKPFESLDTEIPRFMSEFGFQAFPEM KTIATFASPEDYALESEVMNAHQKATIGNFLIKKTMGLYYKVPEDFDQLVYMGLVLQGVGVRQGLEAHRRNRPYCMGTLY WQLNDSWPVVSWSSIDYYGNWKALHYQAKRAFAPVLVDAVKEGEDLNIYVMSDKLEADKEVTLLLRVMDFNGKVLTKKSI KGEVPANASTLYYKEPYAGMTTSPQNTFLLMTLKNKKGEVLSEEIYYFNHAKDQELPKTEIRYKVKPMDGKYEVTLSARQ LARDVFIEIPVQGARFTDNFFDLLPGQTKKVIITSDKLKKNEKVDITIKQLSDTN
Sequences:
>Translated_855_residues MKKTLKVLMMLGCFPMMLSAKEYKKSESLSLDKGWEFAQVGRNEWLPATVPGTVHQDLISHNKLPNPFYGMNEQKVQWVE NEDWVYKTTFNVTDEQLSRDAALLILEGLDTYADIYLNGSLLERTDNMFVGYTLPVKEVLRKGENHLQILFHSPVKQTLP QWETNGFDYPADNDHSDKRVSIYSRKAPYSYGWDWGIRLVTSGIWRPVTLTFYDVARIDDYYVRQASVTKDLAKVENRLT VNSVSATPQKAEVTVAYSYKEGEKVTEQKEVTLQPGTNHILLPIEIRQPHLWMPNGWGEPALYDFEAVIKVDGKVIASQK ERIGLRTIKVVKEKDDQGESFYFVVNGEPMFAKGANFIPDDALLPNITEERYRQLFKDVKDANMNMIRVWGGGIYEDDAF YQAADENGILVWQDFIFACTTYPSDPAFMKRVEAEAEYNIKRLRNHASLAMWCGNNEIYEGMRYWGWDKKYTDPGIMEGM KQGYDKLFRELLPRKVAELDPDRFYMHGSPYEANWGRPESWKIADSHNWGIWYGQKPFESLDTEIPRFMSEFGFQAFPEM KTIATFASPEDYALESEVMNAHQKATIGNFLIKKTMGLYYKVPEDFDQLVYMGLVLQGVGVRQGLEAHRRNRPYCMGTLY WQLNDSWPVVSWSSIDYYGNWKALHYQAKRAFAPVLVDAVKEGEDLNIYVMSDKLEADKEVTLLLRVMDFNGKVLTKKSI KGEVPANASTLYYKEPYAGMTTSPQNTFLLMTLKNKKGEVLSEEIYYFNHAKDQELPKTEIRYKVKPMDGKYEVTLSARQ LARDVFIEIPVQGARFTDNFFDLLPGQTKKVIITSDKLKKNEKVDITIKQLSDTN >Mature_855_residues MKKTLKVLMMLGCFPMMLSAKEYKKSESLSLDKGWEFAQVGRNEWLPATVPGTVHQDLISHNKLPNPFYGMNEQKVQWVE NEDWVYKTTFNVTDEQLSRDAALLILEGLDTYADIYLNGSLLERTDNMFVGYTLPVKEVLRKGENHLQILFHSPVKQTLP QWETNGFDYPADNDHSDKRVSIYSRKAPYSYGWDWGIRLVTSGIWRPVTLTFYDVARIDDYYVRQASVTKDLAKVENRLT VNSVSATPQKAEVTVAYSYKEGEKVTEQKEVTLQPGTNHILLPIEIRQPHLWMPNGWGEPALYDFEAVIKVDGKVIASQK ERIGLRTIKVVKEKDDQGESFYFVVNGEPMFAKGANFIPDDALLPNITEERYRQLFKDVKDANMNMIRVWGGGIYEDDAF YQAADENGILVWQDFIFACTTYPSDPAFMKRVEAEAEYNIKRLRNHASLAMWCGNNEIYEGMRYWGWDKKYTDPGIMEGM KQGYDKLFRELLPRKVAELDPDRFYMHGSPYEANWGRPESWKIADSHNWGIWYGQKPFESLDTEIPRFMSEFGFQAFPEM KTIATFASPEDYALESEVMNAHQKATIGNFLIKKTMGLYYKVPEDFDQLVYMGLVLQGVGVRQGLEAHRRNRPYCMGTLY WQLNDSWPVVSWSSIDYYGNWKALHYQAKRAFAPVLVDAVKEGEDLNIYVMSDKLEADKEVTLLLRVMDFNGKVLTKKSI KGEVPANASTLYYKEPYAGMTTSPQNTFLLMTLKNKKGEVLSEEIYYFNHAKDQELPKTEIRYKVKPMDGKYEVTLSARQ LARDVFIEIPVQGARFTDNFFDLLPGQTKKVIITSDKLKKNEKVDITIKQLSDTN
Specific function: Hydrolyzes chitosan and chitooligosaccharides with retention of anomeric configuration. Has no beta-mannosidase activity [H]
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Secreted, extracellular space [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 2 family [H]
Homologues:
Organism=Homo sapiens, GI84798622, Length=857, Percent_Identity=30.3383897316219, Blast_Score=374, Evalue=1e-103, Organism=Caenorhabditis elegans, GI17550784, Length=929, Percent_Identity=27.1259418729817, Blast_Score=295, Evalue=7e-80, Organism=Drosophila melanogaster, GI24643838, Length=759, Percent_Identity=29.3807641633729, Blast_Score=288, Evalue=1e-77, Organism=Drosophila melanogaster, GI24643840, Length=698, Percent_Identity=29.9426934097421, Blast_Score=258, Evalue=1e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR013812 - InterPro: IPR006104 - InterPro: IPR006102 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00703 Glyco_hydro_2; PF02837 Glyco_hydro_2_N [H]
EC number: =3.2.1.165 [H]
Molecular weight: Translated: 98688; Mature: 98688
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTLKVLMMLGCFPMMLSAKEYKKSESLSLDKGWEFAQVGRNEWLPATVPGTVHQDLIS CCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHH HNKLPNPFYGMNEQKVQWVENEDWVYKTTFNVTDEQLSRDAALLILEGLDTYADIYLNGS CCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCHHHHCCCEEEEEEECCCCEEEEEECCH LLERTDNMFVGYTLPVKEVLRKGENHLQILFHSPVKQTLPQWETNGFDYPADNDHSDKRV HHHCCCCEEEEEECCHHHHHHCCCCEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCEE SIYSRKAPYSYGWDWGIRLVTSGIWRPVTLTFYDVARIDDYYVRQASVTKDLAKVENRLT EEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHHHCCEE VNSVSATPQKAEVTVAYSYKEGEKVTEQKEVTLQPGTNHILLPIEIRQPHLWMPNGWGEP EEECCCCCCCEEEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECCCEEECCCCCCCC ALYDFEAVIKVDGKVIASQKERIGLRTIKVVKEKDDQGESFYFVVNGEPMFAKGANFIPD CEECEEEEEEECCEEEECHHHHCCCEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCCC DALLPNITEERYRQLFKDVKDANMNMIRVWGGGIYEDDAFYQAADENGILVWQDFIFACT CCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCEECCCCCEEECCCCCEEEEEEEEEEEE TYPSDPAFMKRVEAEAEYNIKRLRNHASLAMWCGNNEIYEGMRYWGWDKKYTDPGIMEGM CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCHHHCCCCCCCCCCHHHHHH KQGYDKLFRELLPRKVAELDPDRFYMHGSPYEANWGRPESWKIADSHNWGIWYGQKPFES HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCCEEEECCCCHHH LDTEIPRFMSEFGFQAFPEMKTIATFASPEDYALESEVMNAHQKATIGNFLIKKTMGLYY HHHHHHHHHHHCCCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE KVPEDFDQLVYMGLVLQGVGVRQGLEAHRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGN ECCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEECCCCCCCC WKALHYQAKRAFAPVLVDAVKEGEDLNIYVMSDKLEADKEVTLLLRVMDFNGKVLTKKSI EEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEECCC KGEVPANASTLYYKEPYAGMTTSPQNTFLLMTLKNKKGEVLSEEIYYFNHAKDQELPKTE CCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHEEEECCCCCCCCCCC IRYKVKPMDGKYEVTLSARQLARDVFIEIPVQGARFTDNFFDLLPGQTKKVIITSDKLKK EEEEEECCCCCEEEEEEHHHHHCEEEEEECCCCCEECCHHHHHCCCCCCEEEEECCCCCC NEKVDITIKQLSDTN CCEEEEEEEECCCCC >Mature Secondary Structure MKKTLKVLMMLGCFPMMLSAKEYKKSESLSLDKGWEFAQVGRNEWLPATVPGTVHQDLIS CCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHH HNKLPNPFYGMNEQKVQWVENEDWVYKTTFNVTDEQLSRDAALLILEGLDTYADIYLNGS CCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCHHHHCCCEEEEEEECCCCEEEEEECCH LLERTDNMFVGYTLPVKEVLRKGENHLQILFHSPVKQTLPQWETNGFDYPADNDHSDKRV HHHCCCCEEEEEECCHHHHHHCCCCEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCEE SIYSRKAPYSYGWDWGIRLVTSGIWRPVTLTFYDVARIDDYYVRQASVTKDLAKVENRLT EEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHHHCCEE VNSVSATPQKAEVTVAYSYKEGEKVTEQKEVTLQPGTNHILLPIEIRQPHLWMPNGWGEP EEECCCCCCCEEEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECCCEEECCCCCCCC ALYDFEAVIKVDGKVIASQKERIGLRTIKVVKEKDDQGESFYFVVNGEPMFAKGANFIPD CEECEEEEEEECCEEEECHHHHCCCEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCCC DALLPNITEERYRQLFKDVKDANMNMIRVWGGGIYEDDAFYQAADENGILVWQDFIFACT CCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCEECCCCCEEECCCCCEEEEEEEEEEEE TYPSDPAFMKRVEAEAEYNIKRLRNHASLAMWCGNNEIYEGMRYWGWDKKYTDPGIMEGM CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCHHHCCCCCCCCCCHHHHHH KQGYDKLFRELLPRKVAELDPDRFYMHGSPYEANWGRPESWKIADSHNWGIWYGQKPFES HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCCEEEECCCCHHH LDTEIPRFMSEFGFQAFPEMKTIATFASPEDYALESEVMNAHQKATIGNFLIKKTMGLYY HHHHHHHHHHHCCCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE KVPEDFDQLVYMGLVLQGVGVRQGLEAHRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGN ECCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEECCCCCCCC WKALHYQAKRAFAPVLVDAVKEGEDLNIYVMSDKLEADKEVTLLLRVMDFNGKVLTKKSI EEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEECCC KGEVPANASTLYYKEPYAGMTTSPQNTFLLMTLKNKKGEVLSEEIYYFNHAKDQELPKTE CCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHEEEECCCCCCCCCCC IRYKVKPMDGKYEVTLSARQLARDVFIEIPVQGARFTDNFFDLLPGQTKKVIITSDKLKK EEEEEECCCCCEEEEEEHHHHHCEEEEEECCCCCEECCHHHHHCCCCCCEEEEECCCCCC NEKVDITIKQLSDTN CCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11572948; 12692562 [H]