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The map label for this gene is araC [C]

Identifier: 150006559

GI number: 150006559

Start: 5019542

End: 5020387

Strand: Direct

Name: araC [C]

Synonym: BVU_4079

Alternate gene names: 150006559

Gene position: 5019542-5020387 (Clockwise)

Preceding gene: 150006551

Following gene: 150006561

Centisome position: 97.22

GC content: 40.66

Gene sequence:

>846_bases
ATGAAGTATATAGATGACATTAACTTATTTAAATCGAATAAGGATTTCGTTGCAGAAATTGACATGACAGGATCATTAGG
CCGTATTTACCACTATCCGCAACGAATGGAAGGATGCTTGTTCCTTCTGTGCCTGCGAGGTGAATGTGACATAACGATCC
ATCTGTCTGAACACAAGATACAAAAGAACGACATTGTCACTATTCTGCCAGAAACCTTTGTACATGTTCACCGGCAAAGT
CCCGACTGTCGTCTGTACTTGATAGGATTCAACAAAGAGTTGCTGAACGGAATAAATCTCTTCAATTCCACCATGAACTA
TCTTTCAGCCCTGATTGACACACCCATTATCCCTCTGCGTCCCGAAATAACCGAGTTGTTTCAAGACTATTTCCGGTTGC
TGATAAAAATGAAACGTATGGGAGCCAAGCCCAATAAAGAGTTAATCAGCACCATGCTGCTCACTATATTGCACGGTGTA
GGCAGCATTCATCAGAACACCAATGTAACCACACGTACTTTCAACCGTGGAGAAGAAATTGTGAAACGCCTGGTCCAATA
TATCATCAAACATTATACGAAAGAACGGAGTGTAGCTTTTTATGCCGACCTGCTTCATATATCCCCTCAGCACCTCAGCA
CTACTGTCAATAAGATTACGGGAAAAACTGTTACAGATATCATCGCCAAACTAGTGATAACAGATGCGGAAGCCAAACTA
AAATCCACAGACTTTACCATTCAGGAAATAGCCTATTCACTTAATTTCCCAGACATCTCATTCTTTGGGAAATATTTTAA
AAGATATACAGGAATGTCACCGAAACAGTATAGGGAGAGCACATAA

Upstream 100 bases:

>100_bases
CTAACAGTAAGATATATTAGTCTATTTTTAAGCATTTTCTTTGTTATCTGCTCTAACTGCCCTATATTTGTGGTGCATAA
TCAAAACCTTCTTTATTTTT

Downstream 100 bases:

>100_bases
CAATGCTCATTCCCCATATAATACGGTTTCGGTAATCCATGCAAAAACATTGGCTATCAATTTGGAAGCATCATTATTGA
TGGTTCCTGCTGTGTTATTA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Regulatory Protein; AraC/XylS Family Transcriptional Regulator; Transcription Regulator AraC-Type; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcription Regulator; Transcriptional Regulator PobR; Phosphomethylpyrimidine Kinase; Response Regulator Receiver Protein; AraC Family Two Component Transcriptional Regulator; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Helix-Turn-Helix Protein; Two Component Transcriptional Regulator; Response Regulator; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family; AraC-Type Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Two-Component Response Regulator YesN; AraC-Type Transcriptional Regulator; Two Component Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKYIDDINLFKSNKDFVAEIDMTGSLGRIYHYPQRMEGCLFLLCLRGECDITIHLSEHKIQKNDIVTILPETFVHVHRQS
PDCRLYLIGFNKELLNGINLFNSTMNYLSALIDTPIIPLRPEITELFQDYFRLLIKMKRMGAKPNKELISTMLLTILHGV
GSIHQNTNVTTRTFNRGEEIVKRLVQYIIKHYTKERSVAFYADLLHISPQHLSTTVNKITGKTVTDIIAKLVITDAEAKL
KSTDFTIQEIAYSLNFPDISFFGKYFKRYTGMSPKQYREST

Sequences:

>Translated_281_residues
MKYIDDINLFKSNKDFVAEIDMTGSLGRIYHYPQRMEGCLFLLCLRGECDITIHLSEHKIQKNDIVTILPETFVHVHRQS
PDCRLYLIGFNKELLNGINLFNSTMNYLSALIDTPIIPLRPEITELFQDYFRLLIKMKRMGAKPNKELISTMLLTILHGV
GSIHQNTNVTTRTFNRGEEIVKRLVQYIIKHYTKERSVAFYADLLHISPQHLSTTVNKITGKTVTDIIAKLVITDAEAKL
KSTDFTIQEIAYSLNFPDISFFGKYFKRYTGMSPKQYREST
>Mature_281_residues
MKYIDDINLFKSNKDFVAEIDMTGSLGRIYHYPQRMEGCLFLLCLRGECDITIHLSEHKIQKNDIVTILPETFVHVHRQS
PDCRLYLIGFNKELLNGINLFNSTMNYLSALIDTPIIPLRPEITELFQDYFRLLIKMKRMGAKPNKELISTMLLTILHGV
GSIHQNTNVTTRTFNRGEEIVKRLVQYIIKHYTKERSVAFYADLLHISPQHLSTTVNKITGKTVTDIIAKLVITDAEAKL
KSTDFTIQEIAYSLNFPDISFFGKYFKRYTGMSPKQYREST

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32509; Mature: 32509

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYIDDINLFKSNKDFVAEIDMTGSLGRIYHYPQRMEGCLFLLCLRGECDITIHLSEHKI
CCCCCCCHHHCCCCCEEEEEECCCCCHHHHCCHHHHHHHHEEEEECCCCCEEEEECCCCC
QKNDIVTILPETFVHVHRQSPDCRLYLIGFNKELLNGINLFNSTMNYLSALIDTPIIPLR
CCCCEEEECCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PEITELFQDYFRLLIKMKRMGAKPNKELISTMLLTILHGVGSIHQNTNVTTRTFNRGEEI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHH
VKRLVQYIIKHYTKERSVAFYADLLHISPQHLSTTVNKITGKTVTDIIAKLVITDAEAKL
HHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHH
KSTDFTIQEIAYSLNFPDISFFGKYFKRYTGMSPKQYREST
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MKYIDDINLFKSNKDFVAEIDMTGSLGRIYHYPQRMEGCLFLLCLRGECDITIHLSEHKI
CCCCCCCHHHCCCCCEEEEEECCCCCHHHHCCHHHHHHHHEEEEECCCCCEEEEECCCCC
QKNDIVTILPETFVHVHRQSPDCRLYLIGFNKELLNGINLFNSTMNYLSALIDTPIIPLR
CCCCEEEECCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PEITELFQDYFRLLIKMKRMGAKPNKELISTMLLTILHGVGSIHQNTNVTTRTFNRGEEI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHH
VKRLVQYIIKHYTKERSVAFYADLLHISPQHLSTTVNKITGKTVTDIIAKLVITDAEAKL
HHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHH
KSTDFTIQEIAYSLNFPDISFFGKYFKRYTGMSPKQYREST
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA