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The map label for this gene is rarA [H]

Identifier: 150006392

GI number: 150006392

Start: 4821014

End: 4822291

Strand: Reverse

Name: rarA [H]

Synonym: BVU_3911

Alternate gene names: 150006392

Gene position: 4822291-4821014 (Counterclockwise)

Preceding gene: 150006399

Following gene: 150006391

Centisome position: 93.4

GC content: 56.34

Gene sequence:

>1278_bases
ATGGCACAACCTTTAGCAGAACGTTTGCGTCCGAAGACATTGGACGATTATATAGGTCAGAAACACCTGGTGGGGCCGGG
GGCTGTCTTGCGCAAGATGATTGACGCGGGACGCATCTCCTCCTTTATCCTCTGGGGGCCTCCGGGGGTGGGGAAGACCA
CGCTGGCGCAGATCATAGCCAACAAGCTGGAAACTCCTTTTTATACACTGAGCGCGGTCACTTCCGGTGTGAAGGATGTG
CGCGATGTGATAGAGAAGGCGAGAAGCAACCGTTTTTTCTCTCAGGCCAGCCCCATCCTGTTCATTGATGAAATCCACCG
GTTCAGCAAGTCCCAGCAGGATTCCCTGTTGGGGGCGGTGGAAACGGGAGTGGTGACCCTGATAGGCGCCACCACCGAGA
ATCCTTCGTTCGAGGTGATCCGGCCCTTGCTCTCCCGCTGCCAGCTGTATGTGCTGAAATCATTGGAGAAGGAAGATTTG
CTGGAACTGCTGCATAATGCCATCGCAAAGGACGTGATACTGAAAGAAAAGAAGATAGAGCTGAAGGAGACGGATGCCAT
GCTCCGCTTTTCGGGAGGCGATGCCCGCAAGCTGCTGAACATACTGGAACTGGTGGTGGAGGCGGATGCGGATGCCGGAC
CCGTGGTGATTACGGATGAGAAGGTGACCGAGCGTCTGCAGCAGAATCCGTTGGCGTATGACAAGGACGGGGAGATGCAT
TATGATATCATTTCCGCCTTTATCAAGTCCATCCGCGGAAGTGATCCGGACGGGGCGCTCTACTGGCTGGCGCGTATGGT
GGAGGCCGGAGAGGACCCGGCTTTCATAGCCCGCAGACTGGTCATTTCGGCAGCCGAGGATATCGGTCTGGCCAATCCCA
ACGCATTGCTCCTGGCGAACGCCGCTTTTGATGCCGTGATGAAGATAGGATGGCCTGAGGGGCGTATCCCGCTGGCGGAA
GCTACGGTGTATCTGGCCACCAGCCCCAAGAGCAACTCGGCATACGAGGGAATCAACAGTGCCCTGGAACTGGTGCGGCA
GACGGGCAATCTGCCTGTTCCCTTGCATCTGCGCAACGCACCCACCAAGCTGATGAAACAGTTGGGCTATGGCAAGGATT
ACAAGTATGCACATGCCTATCAGGGCAATTTCGTGCAGCAGCAGTTCCTGCCGGACGAGGTGAAGGACAGCCGCATCTGG
CATCCGCAGAACAATGCGCAGGAAGCGAAGATAAAGGAACGGATGCAGAGCCTCTGGGGGGAACGGTTCAAGGAATGA

Upstream 100 bases:

>100_bases
TGTTTTTCTGCCTTAAAAAAATAAATCCTATATTGTTGCCCTGGGCTTTGTTCATAGGAAAATATGCTGTATTTTTGTTA
TCCGAAATAAAGATGAAGAT

Downstream 100 bases:

>100_bases
AAATGAATTGCATTGATCCTGTGCTATAAAATTAAAAATTGGAACGCAAATGACATAAATCCAACCTTCCGGCCGGTTTA
TATCCATACTGTGCAGCTGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MAQPLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDV
RDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDL
LELLHNAIAKDVILKEKKIELKETDAMLRFSGGDARKLLNILELVVEADADAGPVVITDEKVTERLQQNPLAYDKDGEMH
YDIISAFIKSIRGSDPDGALYWLARMVEAGEDPAFIARRLVISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAE
ATVYLATSPKSNSAYEGINSALELVRQTGNLPVPLHLRNAPTKLMKQLGYGKDYKYAHAYQGNFVQQQFLPDEVKDSRIW
HPQNNAQEAKIKERMQSLWGERFKE

Sequences:

>Translated_425_residues
MAQPLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDV
RDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDL
LELLHNAIAKDVILKEKKIELKETDAMLRFSGGDARKLLNILELVVEADADAGPVVITDEKVTERLQQNPLAYDKDGEMH
YDIISAFIKSIRGSDPDGALYWLARMVEAGEDPAFIARRLVISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAE
ATVYLATSPKSNSAYEGINSALELVRQTGNLPVPLHLRNAPTKLMKQLGYGKDYKYAHAYQGNFVQQQFLPDEVKDSRIW
HPQNNAQEAKIKERMQSLWGERFKE
>Mature_424_residues
AQPLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDVR
DVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLL
ELLHNAIAKDVILKEKKIELKETDAMLRFSGGDARKLLNILELVVEADADAGPVVITDEKVTERLQQNPLAYDKDGEMHY
DIISAFIKSIRGSDPDGALYWLARMVEAGEDPAFIARRLVISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEA
TVYLATSPKSNSAYEGINSALELVRQTGNLPVPLHLRNAPTKLMKQLGYGKDYKYAHAYQGNFVQQQFLPDEVKDSRIWH
PQNNAQEAKIKERMQSLWGERFKE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=433, Percent_Identity=46.8822170900693, Blast_Score=355, Evalue=6e-98,
Organism=Homo sapiens, GI18426904, Length=433, Percent_Identity=43.4180138568129, Blast_Score=304, Evalue=8e-83,
Organism=Homo sapiens, GI6677723, Length=210, Percent_Identity=24.7619047619048, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI194306571, Length=217, Percent_Identity=24.8847926267281, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI194306567, Length=217, Percent_Identity=24.8847926267281, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1787119, Length=428, Percent_Identity=45.5607476635514, Blast_Score=374, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=42.1800947867299, Blast_Score=306, Evalue=4e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=208, Percent_Identity=27.8846153846154, Blast_Score=83, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6322528, Length=298, Percent_Identity=22.8187919463087, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI18859927, Length=214, Percent_Identity=27.1028037383178, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19921076, Length=213, Percent_Identity=24.4131455399061, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47219; Mature: 47088

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIA
CCCCHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
NKLETPFYTLSAVTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEHHHHHHHCCCHHHHHHHHH
ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLHNAIAKDVILKEKKIE
HHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCH
LKETDAMLRFSGGDARKLLNILELVVEADADAGPVVITDEKVTERLQQNPLAYDKDGEMH
HHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCH
YDIISAFIKSIRGSDPDGALYWLARMVEAGEDPAFIARRLVISAAEDIGLANPNALLLAN
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEH
AAFDAVMKIGWPEGRIPLAEATVYLATSPKSNSAYEGINSALELVRQTGNLPVPLHLRNA
HHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
PTKLMKQLGYGKDYKYAHAYQGNFVQQQFLPDEVKDSRIWHPQNNAQEAKIKERMQSLWG
HHHHHHHCCCCCCCCEEEHHCCCCHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHH
ERFKE
HHCCC
>Mature Secondary Structure 
AQPLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIA
CCCHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
NKLETPFYTLSAVTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAV
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEHHHHHHHCCCHHHHHHHHH
ETGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLHNAIAKDVILKEKKIE
HHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCH
LKETDAMLRFSGGDARKLLNILELVVEADADAGPVVITDEKVTERLQQNPLAYDKDGEMH
HHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCH
YDIISAFIKSIRGSDPDGALYWLARMVEAGEDPAFIARRLVISAAEDIGLANPNALLLAN
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEH
AAFDAVMKIGWPEGRIPLAEATVYLATSPKSNSAYEGINSALELVRQTGNLPVPLHLRNA
HHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
PTKLMKQLGYGKDYKYAHAYQGNFVQQQFLPDEVKDSRIWHPQNNAQEAKIKERMQSLWG
HHHHHHHCCCCCCCCEEEHHCCCCHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHH
ERFKE
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]