| Definition | Bacteroides vulgatus ATCC 8482 chromosome, complete genome. |
|---|---|
| Accession | NC_009614 |
| Length | 5,163,189 |
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The map label for this gene is lepA
Identifier: 150006386
GI number: 150006386
Start: 4815121
End: 4816902
Strand: Reverse
Name: lepA
Synonym: BVU_3905
Alternate gene names: 150006386
Gene position: 4816902-4815121 (Counterclockwise)
Preceding gene: 150006387
Following gene: 150006385
Centisome position: 93.29
GC content: 51.18
Gene sequence:
>1782_bases ATGAAGAATATCCGTAATTTTTGCATTATAGCACATATAGACCACGGGAAATCGACCTTGGCCGACCGTTTGTTGGAGTT TACAAAAACCATCCAGGTAACCGAAGGGCAGATGCTTGACGATATGGACCTGGAAAAGGAGAGAGGTATTACAATCAAGA GCCATGCCATCCAGATGGAGTACGAGTATGGGGGAGAGAAGTATGTACTGAATCTGATTGACACTCCGGGACACGTGGAC TTTTCATACGAGGTATCCCGTTCCATAGCCGCCTGTGAAGGGGCGCTGCTCATTGTGGACGCTTCGCAGGGAGTGCAGGC GCAGACTATCTCGAATCTGTACATGGCGTTGGAGCATGACCTGGAAATCATTCCCGTGCTGAACAAATGTGATATGGCGA GTGCCATGCCCGATGAGGTGGAAGATGAAATCATCGACCTGCTGGGCTGCAAACATGAGGATATTATCCGTGCCTCCGGC AAGACCGGAATGGGTGTGGAGGAGATATTGAAGGCGGTGGTGGAACGTATCCCGCACCCGACGGGGGACGAGGAGGCGCC GCTACAGGCTTTGATTTTCGACTCGGTATTCAATTCTTTCCGTGGGATCATCGCGTATTTTAAAATAGAGAACGGGGTGA TCCGCAAAGGGGACAAGGTGAAATTCTTCAATACCGGCAAGGAGTATGATGCAGATGAGATCGGTGTGCTGAAAATGGAT ATGATTCCCCGTGCGGAACTGCGCACAGGAGATGTGGGGTATATCATTTCGGGCATCAAGACCTCGCGCGAGGTGAAGGT GGGGGATACCATCACTCACATCGCCCGTCCGTGTGAAAAGGCGATTGCCGGATTCGAGGAAGTGAAGCCGATGGTGTTTG CCGGGGTTTATCCTATCGAGGCGGAAGATTACGAGAACCTCCGCGCTTCGCTGGAGAAACTTCAGCTGAATGATGCCTCG CTGACTTTCCAGCCGGAGTCTTCACTGGCTCTGGGCTTCGGATTCCGTTGCGGTTTTCTGGGATTGCTTCACATGGAGAT TGTTCAGGAACGTCTGGACCGCGAGTTTGATATGAATGTGATTACGACCGTGCCCAACGTGTCGTACATGGTGTATGACA AGCAGGGACATGCCAACGAGGTGCATAATCCCGGCGGTATGCCCGATCCGACGCTGATTGACCACATCGAGGAACCTTTC ATTGATGCCACGATCATTACCGCCACCGATTACATCGGCCCTATCATGACACTGTGTCTGGGCAAGCGCGGCGAACTGGT GCGGCAGAATTATGTGTCGGGCAACCGGGTGGAGATTCACTACAAGATGCCGCTGGGTGAAATCGTGATTGACTTTTATG ACAAGCTGAAGAGTATCTCGAAAGGATATGCTTCCTTTGACTACCATCAGTCGGGTTTCCGCCCTTCCAAACTGGTGAAG CTGGATATCTTGTTGAACGGTGAGCCGGTGGATGCGCTTTCTACCCTGACACATGTGGACAATGCCTATAACCTGGGCAA GCGTATGTGTGAGAAACTGAAAGAGCTGATTCCGCGCCAGCAGTTTGATATTGCCATTCAGGCAGCTATCGGGGCGAAGA TTATCTCAAGGGAAACCATCAAGGCGGTGCGCAAGGATGTGACCGCGAAGTGTTATGGCGGTGACGTGAGCCGTAAGCGT AAATTGTTGGAAAAACAAAAAAGAGGTAAGAAACGAATGAAACAGATCGGTAATGTGGAAGTACCGCAAAAGGCGTTCCT GGCCGTTCTGAAGCTGGATTAA
Upstream 100 bases:
>100_bases ATCTTCTGGTTTTGATTTCAGATGGTTTGTATTATTCCTGCAAAATTCATCCGTATATGAGCGAGTTTTTGTATATTTGC GCGAAATTTAAGTGACGAAG
Downstream 100 bases:
>100_bases TTCAAGAATAAACAAGCTCTGGGGAGCAAACAATAAGCGGGCTCTTTCTGTTAGTTGAAATTAAAAAGTCAATAACAGGA AGGGCTTGTGTTTTGATGGC
Product: GTP-binding protein LepA
Products: NA
Alternate protein names: EF-4; Ribosomal back-translocase LepA
Number of amino acids: Translated: 593; Mature: 593
Protein sequence:
>593_residues MKNIRNFCIIAHIDHGKSTLADRLLEFTKTIQVTEGQMLDDMDLEKERGITIKSHAIQMEYEYGGEKYVLNLIDTPGHVD FSYEVSRSIAACEGALLIVDASQGVQAQTISNLYMALEHDLEIIPVLNKCDMASAMPDEVEDEIIDLLGCKHEDIIRASG KTGMGVEEILKAVVERIPHPTGDEEAPLQALIFDSVFNSFRGIIAYFKIENGVIRKGDKVKFFNTGKEYDADEIGVLKMD MIPRAELRTGDVGYIISGIKTSREVKVGDTITHIARPCEKAIAGFEEVKPMVFAGVYPIEAEDYENLRASLEKLQLNDAS LTFQPESSLALGFGFRCGFLGLLHMEIVQERLDREFDMNVITTVPNVSYMVYDKQGHANEVHNPGGMPDPTLIDHIEEPF IDATIITATDYIGPIMTLCLGKRGELVRQNYVSGNRVEIHYKMPLGEIVIDFYDKLKSISKGYASFDYHQSGFRPSKLVK LDILLNGEPVDALSTLTHVDNAYNLGKRMCEKLKELIPRQQFDIAIQAAIGAKIISRETIKAVRKDVTAKCYGGDVSRKR KLLEKQKRGKKRMKQIGNVEVPQKAFLAVLKLD
Sequences:
>Translated_593_residues MKNIRNFCIIAHIDHGKSTLADRLLEFTKTIQVTEGQMLDDMDLEKERGITIKSHAIQMEYEYGGEKYVLNLIDTPGHVD FSYEVSRSIAACEGALLIVDASQGVQAQTISNLYMALEHDLEIIPVLNKCDMASAMPDEVEDEIIDLLGCKHEDIIRASG KTGMGVEEILKAVVERIPHPTGDEEAPLQALIFDSVFNSFRGIIAYFKIENGVIRKGDKVKFFNTGKEYDADEIGVLKMD MIPRAELRTGDVGYIISGIKTSREVKVGDTITHIARPCEKAIAGFEEVKPMVFAGVYPIEAEDYENLRASLEKLQLNDAS LTFQPESSLALGFGFRCGFLGLLHMEIVQERLDREFDMNVITTVPNVSYMVYDKQGHANEVHNPGGMPDPTLIDHIEEPF IDATIITATDYIGPIMTLCLGKRGELVRQNYVSGNRVEIHYKMPLGEIVIDFYDKLKSISKGYASFDYHQSGFRPSKLVK LDILLNGEPVDALSTLTHVDNAYNLGKRMCEKLKELIPRQQFDIAIQAAIGAKIISRETIKAVRKDVTAKCYGGDVSRKR KLLEKQKRGKKRMKQIGNVEVPQKAFLAVLKLD >Mature_593_residues MKNIRNFCIIAHIDHGKSTLADRLLEFTKTIQVTEGQMLDDMDLEKERGITIKSHAIQMEYEYGGEKYVLNLIDTPGHVD FSYEVSRSIAACEGALLIVDASQGVQAQTISNLYMALEHDLEIIPVLNKCDMASAMPDEVEDEIIDLLGCKHEDIIRASG KTGMGVEEILKAVVERIPHPTGDEEAPLQALIFDSVFNSFRGIIAYFKIENGVIRKGDKVKFFNTGKEYDADEIGVLKMD MIPRAELRTGDVGYIISGIKTSREVKVGDTITHIARPCEKAIAGFEEVKPMVFAGVYPIEAEDYENLRASLEKLQLNDAS LTFQPESSLALGFGFRCGFLGLLHMEIVQERLDREFDMNVITTVPNVSYMVYDKQGHANEVHNPGGMPDPTLIDHIEEPF IDATIITATDYIGPIMTLCLGKRGELVRQNYVSGNRVEIHYKMPLGEIVIDFYDKLKSISKGYASFDYHQSGFRPSKLVK LDILLNGEPVDALSTLTHVDNAYNLGKRMCEKLKELIPRQQFDIAIQAAIGAKIISRETIKAVRKDVTAKCYGGDVSRKR KLLEKQKRGKKRMKQIGNVEVPQKAFLAVLKLD
Specific function: Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- transloc
COG id: COG0481
COG function: function code M; Membrane GTPase LepA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. LepA subfamily
Homologues:
Organism=Homo sapiens, GI157426893, Length=601, Percent_Identity=49.9168053244592, Blast_Score=629, Evalue=1e-180, Organism=Homo sapiens, GI94966754, Length=132, Percent_Identity=46.969696969697, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI310132016, Length=109, Percent_Identity=45.8715596330275, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI310110807, Length=109, Percent_Identity=45.8715596330275, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI310123363, Length=109, Percent_Identity=45.8715596330275, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI4503483, Length=146, Percent_Identity=40.4109589041096, Blast_Score=102, Evalue=7e-22, Organism=Homo sapiens, GI25306283, Length=137, Percent_Identity=41.6058394160584, Blast_Score=99, Evalue=9e-21, Organism=Homo sapiens, GI25306287, Length=137, Percent_Identity=41.6058394160584, Blast_Score=99, Evalue=9e-21, Organism=Homo sapiens, GI19923640, Length=137, Percent_Identity=41.6058394160584, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI18390331, Length=142, Percent_Identity=38.0281690140845, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI34147630, Length=279, Percent_Identity=29.3906810035842, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI53729339, Length=217, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=8e-15, Organism=Homo sapiens, GI53729337, Length=217, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=8e-15, Organism=Homo sapiens, GI217272894, Length=133, Percent_Identity=35.3383458646617, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI217272892, Length=133, Percent_Identity=35.3383458646617, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI94966752, Length=93, Percent_Identity=38.7096774193548, Blast_Score=74, Evalue=4e-13, Organism=Escherichia coli, GI1788922, Length=594, Percent_Identity=55.3872053872054, Blast_Score=655, Evalue=0.0, Organism=Escherichia coli, GI48994988, Length=512, Percent_Identity=27.734375, Blast_Score=150, Evalue=3e-37, Organism=Escherichia coli, GI1790835, Length=180, Percent_Identity=32.7777777777778, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1789738, Length=183, Percent_Identity=36.0655737704918, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1789559, Length=221, Percent_Identity=27.6018099547511, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI1790412, Length=275, Percent_Identity=27.6363636363636, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1789737, Length=275, Percent_Identity=27.6363636363636, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17557151, Length=607, Percent_Identity=41.6803953871499, Blast_Score=504, Evalue=1e-143, Organism=Caenorhabditis elegans, GI17556745, Length=153, Percent_Identity=35.9477124183007, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17533571, Length=145, Percent_Identity=37.9310344827586, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17506493, Length=161, Percent_Identity=37.2670807453416, Blast_Score=96, Evalue=4e-20, Organism=Caenorhabditis elegans, GI71988811, Length=133, Percent_Identity=38.3458646616541, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71988819, Length=133, Percent_Identity=38.3458646616541, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17552882, Length=133, Percent_Identity=34.5864661654135, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17556456, Length=251, Percent_Identity=29.0836653386454, Blast_Score=75, Evalue=9e-14, Organism=Caenorhabditis elegans, GI25141371, Length=287, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6323320, Length=602, Percent_Identity=44.3521594684385, Blast_Score=525, Evalue=1e-150, Organism=Saccharomyces cerevisiae, GI6323098, Length=182, Percent_Identity=37.3626373626374, Blast_Score=112, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6324707, Length=148, Percent_Identity=41.2162162162162, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6320593, Length=148, Percent_Identity=41.2162162162162, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6322359, Length=114, Percent_Identity=42.1052631578947, Blast_Score=89, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6324166, Length=141, Percent_Identity=41.8439716312057, Blast_Score=89, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6324761, Length=241, Percent_Identity=28.6307053941909, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI78706572, Length=601, Percent_Identity=44.5923460898502, Blast_Score=541, Evalue=1e-154, Organism=Drosophila melanogaster, GI28574573, Length=138, Percent_Identity=45.6521739130435, Blast_Score=106, Evalue=4e-23, Organism=Drosophila melanogaster, GI24585711, Length=151, Percent_Identity=39.7350993377483, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI24585713, Length=151, Percent_Identity=39.7350993377483, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI24585709, Length=151, Percent_Identity=39.7350993377483, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI24582462, Length=148, Percent_Identity=37.1621621621622, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI221458488, Length=137, Percent_Identity=38.6861313868613, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI281363316, Length=277, Percent_Identity=29.6028880866426, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI17864358, Length=277, Percent_Identity=29.6028880866426, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI21357743, Length=133, Percent_Identity=33.8345864661654, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI19921738, Length=286, Percent_Identity=24.8251748251748, Blast_Score=70, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): LEPA_BACV8 (A6L744)
Other databases:
- EMBL: CP000139 - RefSeq: YP_001301130.1 - ProteinModelPortal: A6L744 - SMR: A6L744 - STRING: A6L744 - GeneID: 5304864 - GenomeReviews: CP000139_GR - KEGG: bvu:BVU_3905 - NMPDR: fig|435590.6.peg.3620 - eggNOG: COG0481 - HOGENOM: HBG286375 - OMA: YDSYRGV - ProtClustDB: PRK05433 - GO: GO:0006412 - HAMAP: MF_00071 - InterPro: IPR009022 - InterPro: IPR006297 - InterPro: IPR013842 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 - Gene3D: G3DSA:3.30.70.240 - PRINTS: PR00315 - SMART: SM00838 - TIGRFAMs: TIGR01393 - TIGRFAMs: TIGR00231
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF06421 LepA_C; SSF54980 EFG_III_V; SSF50447 Translat_factor
EC number: NA
Molecular weight: Translated: 66372; Mature: 66372
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIRNFCIIAHIDHGKSTLADRLLEFTKTIQVTEGQMLDDMDLEKERGITIKSHAIQME CCCCCCEEEEEEECCCHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHCCCEEEEEEEEEE YEYGGEKYVLNLIDTPGHVDFSYEVSRSIAACEGALLIVDASQGVQAQTISNLYMALEHD EECCCCEEEEEEECCCCCCEEEHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCC LEIIPVLNKCDMASAMPDEVEDEIIDLLGCKHEDIIRASGKTGMGVEEILKAVVERIPHP CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCC TGDEEAPLQALIFDSVFNSFRGIIAYFKIENGVIRKGDKVKFFNTGKEYDADEIGVLKMD CCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCEECCCCEEEEEECCCCCCCCCCCEEEEC MIPRAELRTGDVGYIISGIKTSREVKVGDTITHIARPCEKAIAGFEEVKPMVFAGVYPIE CCCCCCCCCCCHHHEEECCCCCCEEECCHHHHHHHHHHHHHHCCHHHCCCCCEECCCCCC AEDYENLRASLEKLQLNDASLTFQPESSLALGFGFRCGFLGLLHMEIVQERLDREFDMNV CCHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEE ITTVPNVSYMVYDKQGHANEVHNPGGMPDPTLIDHIEEPFIDATIITATDYIGPIMTLCL EEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHC GKRGELVRQNYVSGNRVEIHYKMPLGEIVIDFYDKLKSISKGYASFDYHQSGFRPSKLVK CCCCHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE LDILLNGEPVDALSTLTHVDNAYNLGKRMCEKLKELIPRQQFDIAIQAAIGAKIISRETI EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEHHHHHHHHHHHHH KAVRKDVTAKCYGGDVSRKRKLLEKQKRGKKRMKQIGNVEVPQKAFLAVLKLD HHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEECC >Mature Secondary Structure MKNIRNFCIIAHIDHGKSTLADRLLEFTKTIQVTEGQMLDDMDLEKERGITIKSHAIQME CCCCCCEEEEEEECCCHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHCCCEEEEEEEEEE YEYGGEKYVLNLIDTPGHVDFSYEVSRSIAACEGALLIVDASQGVQAQTISNLYMALEHD EECCCCEEEEEEECCCCCCEEEHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCC LEIIPVLNKCDMASAMPDEVEDEIIDLLGCKHEDIIRASGKTGMGVEEILKAVVERIPHP CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCC TGDEEAPLQALIFDSVFNSFRGIIAYFKIENGVIRKGDKVKFFNTGKEYDADEIGVLKMD CCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCEECCCCEEEEEECCCCCCCCCCCEEEEC MIPRAELRTGDVGYIISGIKTSREVKVGDTITHIARPCEKAIAGFEEVKPMVFAGVYPIE CCCCCCCCCCCHHHEEECCCCCCEEECCHHHHHHHHHHHHHHCCHHHCCCCCEECCCCCC AEDYENLRASLEKLQLNDASLTFQPESSLALGFGFRCGFLGLLHMEIVQERLDREFDMNV CCHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEE ITTVPNVSYMVYDKQGHANEVHNPGGMPDPTLIDHIEEPFIDATIITATDYIGPIMTLCL EEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHC GKRGELVRQNYVSGNRVEIHYKMPLGEIVIDFYDKLKSISKGYASFDYHQSGFRPSKLVK CCCCHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE LDILLNGEPVDALSTLTHVDNAYNLGKRMCEKLKELIPRQQFDIAIQAAIGAKIISRETI EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEEEHHHHHHHHHHHHH KAVRKDVTAKCYGGDVSRKRKLLEKQKRGKKRMKQIGNVEVPQKAFLAVLKLD HHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA