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The map label for this gene is rnfA [H]

Identifier: 150006366

GI number: 150006366

Start: 4790757

End: 4791359

Strand: Reverse

Name: rnfA [H]

Synonym: BVU_3885

Alternate gene names: 150006366

Gene position: 4791359-4790757 (Counterclockwise)

Preceding gene: 150006367

Following gene: 150006365

Centisome position: 92.8

GC content: 41.96

Gene sequence:

>603_bases
ATGGAATATATATTGATATTTATCACCGCTATATTTGTGAACAACATTGTGTTGTCACAATTCTTGGGTATTTGTCCATT
CCTCGGTGTATCCAAGAAAGTTGAGACAGCTACGGGTATGGGAGCGGCTGTTGCATTCGTGCTTACCATCGCTACCATTG
TTACCTATCTTATCCAGAAATTCGTGCTCGATGCTTTCGGGTTGGAATATTTGCAGACCATTGCATTTATCCTTGTCATT
GCAGCATTGGTACAGATGGTGGAAATCATTTTGAAGAAGGTATCTCCCGCCCTTTATCAGGCATTAGGAGTCTTTCTTCC
GTTGATTACTACTAACTGCTGTATTCTGGGTGTGGCTATTTTGGTAATCCAGAAAGACTTTGATTTGTTGACGGGGGTGG
TTTATGCCTTCTCTACAGCTCTTGGTTTTGCTTTGGCTATGGTGTTGTTTGCAGGTATCCGTGAACAATTAAGTTTGGTG
AATATACCTAAAGGAATGCAGGGAATGGCTATCGCATTGGTTACTGCCGGTCTGCTGGCAATGGCATTCATGGGATTTTC
AGGTGTAGACAAAGGCTTGGGTGTTTTGTTTGGAATAGAATAA

Upstream 100 bases:

>100_bases
GTTGATTTTCGTTCTCGCACCGGGAGCCTTCATTGCATTGGGTTACCTCATTGCGATTGTGAATAAACTGAAGAAAGCAT
AACCCGTAAAAAGTAAGAAA

Downstream 100 bases:

>100_bases
ATTCACTTCATCGTTAAAATAAACCGATTCAGAAGTCCGGAGCACAGCTTCGGACTTTTTTATTAGAAAGAAATCCATTG
TTCTTGTCCGTAAATTCAAT

Product: Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein rnfA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MEYILIFITAIFVNNIVLSQFLGICPFLGVSKKVETATGMGAAVAFVLTIATIVTYLIQKFVLDAFGLEYLQTIAFILVI
AALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAILVIQKDFDLLTGVVYAFSTALGFALAMVLFAGIREQLSLV
NIPKGMQGMAIALVTAGLLAMAFMGFSGVDKGLGVLFGIE

Sequences:

>Translated_200_residues
MEYILIFITAIFVNNIVLSQFLGICPFLGVSKKVETATGMGAAVAFVLTIATIVTYLIQKFVLDAFGLEYLQTIAFILVI
AALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAILVIQKDFDLLTGVVYAFSTALGFALAMVLFAGIREQLSLV
NIPKGMQGMAIALVTAGLLAMAFMGFSGVDKGLGVLFGIE
>Mature_200_residues
MEYILIFITAIFVNNIVLSQFLGICPFLGVSKKVETATGMGAAVAFVLTIATIVTYLIQKFVLDAFGLEYLQTIAFILVI
AALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAILVIQKDFDLLTGVVYAFSTALGFALAMVLFAGIREQLSLV
NIPKGMQGMAIALVTAGLLAMAFMGFSGVDKGLGVLFGIE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=190, Percent_Identity=55.2631578947368, Blast_Score=218, Evalue=2e-58,
Organism=Escherichia coli, GI1787919, Length=150, Percent_Identity=29.3333333333333, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21297; Mature: 21297

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYILIFITAIFVNNIVLSQFLGICPFLGVSKKVETATGMGAAVAFVLTIATIVTYLIQK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVLDAFGLEYLQTIAFILVIAALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LVIQKDFDLLTGVVYAFSTALGFALAMVLFAGIREQLSLVNIPKGMQGMAIALVTAGLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
MAFMGFSGVDKGLGVLFGIE
HHHHCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MEYILIFITAIFVNNIVLSQFLGICPFLGVSKKVETATGMGAAVAFVLTIATIVTYLIQK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVLDAFGLEYLQTIAFILVIAALVQMVEIILKKVSPALYQALGVFLPLITTNCCILGVAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LVIQKDFDLLTGVVYAFSTALGFALAMVLFAGIREQLSLVNIPKGMQGMAIALVTAGLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
MAFMGFSGVDKGLGVLFGIE
HHHHCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA