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The map label for this gene is ybdM [H]

Identifier: 150006191

GI number: 150006191

Start: 4573409

End: 4573930

Strand: Reverse

Name: ybdM [H]

Synonym: BVU_3702

Alternate gene names: 150006191

Gene position: 4573930-4573409 (Counterclockwise)

Preceding gene: 150006192

Following gene: 150006190

Centisome position: 88.59

GC content: 49.81

Gene sequence:

>522_bases
ATGTCAAGTTTTAAAAGTCCGGCGTATAACGTCAAGGCCGTGCCAGTCGAGAAAATCGTGGCCAACAGCTATAACCCGAA
TGTCGTTGCTCCCCCGGAGATGAAGCTGTTGGAACTGTCCATCTGGGAAGACGGTTACACGATGCCCCTCGTGTGTTATT
ACCGGGAAGAAGAGGATATCTACGAGCTGGTTGACGGTTACCACCGCTATCTGGTTATGAAAACATCCGTCAGGATTTAC
AAGCGCGAGAACGGATTGCTGCCTGTAACGGTCATAAACAAAGACATCTCGAACAGGATGGCCTCGACTATCCGTCATAA
CAGGGCCAGGGGAATGCACTCGCTGGAACTTATGACAGGTATTGTGGCGGAACTGTCAAAATCGGGTATGTCCGACAGCT
GGATCATGCGCAACATAGGCATGGACAAGAACGAGTTACTCCGTTTCAAACAAATCTCAGGTCTGGCTGAATTGTTTCGT
GACAGGAGTTTCGGGCTCTCGGACGACTGGTTGGAGGAATAA

Upstream 100 bases:

>100_bases
TGAAAAACGATCATACCTGCAAGTATATGGGTTTCACGCAGACCAAACGGGAGAGGGAGATGAAAGAGAGAGTTTTGAAA
AGATATAAATTGTGATTGTC

Downstream 100 bases:

>100_bases
AACGGTCTGTCTGGTATCCGTAACAAATATACATGGTGTTTATGCTTGCAAATCATTATTTGTAGGTATTGCGAGTGATG
ATTAAAACCGTTAATTTTGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSSFKSPAYNVKAVPVEKIVANSYNPNVVAPPEMKLLELSIWEDGYTMPLVCYYREEEDIYELVDGYHRYLVMKTSVRIY
KRENGLLPVTVINKDISNRMASTIRHNRARGMHSLELMTGIVAELSKSGMSDSWIMRNIGMDKNELLRFKQISGLAELFR
DRSFGLSDDWLEE

Sequences:

>Translated_173_residues
MSSFKSPAYNVKAVPVEKIVANSYNPNVVAPPEMKLLELSIWEDGYTMPLVCYYREEEDIYELVDGYHRYLVMKTSVRIY
KRENGLLPVTVINKDISNRMASTIRHNRARGMHSLELMTGIVAELSKSGMSDSWIMRNIGMDKNELLRFKQISGLAELFR
DRSFGLSDDWLEE
>Mature_172_residues
SSFKSPAYNVKAVPVEKIVANSYNPNVVAPPEMKLLELSIWEDGYTMPLVCYYREEEDIYELVDGYHRYLVMKTSVRIYK
RENGLLPVTVINKDISNRMASTIRHNRARGMHSLELMTGIVAELSKSGMSDSWIMRNIGMDKNELLRFKQISGLAELFRD
RSFGLSDDWLEE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=165, Percent_Identity=46.0606060606061, Blast_Score=143, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 19976; Mature: 19845

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFKSPAYNVKAVPVEKIVANSYNPNVVAPPEMKLLELSIWEDGYTMPLVCYYREEEDI
CCCCCCCCCCEECCCHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCEEEEEEECCHHH
YELVDGYHRYLVMKTSVRIYKRENGLLPVTVINKDISNRMASTIRHNRARGMHSLELMTG
HHHHHHHHHEEEEECCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHH
IVAELSKSGMSDSWIMRNIGMDKNELLRFKQISGLAELFRDRSFGLSDDWLEE
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC
>Mature Secondary Structure 
SSFKSPAYNVKAVPVEKIVANSYNPNVVAPPEMKLLELSIWEDGYTMPLVCYYREEEDI
CCCCCCCCCEECCCHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCEEEEEEECCHHH
YELVDGYHRYLVMKTSVRIYKRENGLLPVTVINKDISNRMASTIRHNRARGMHSLELMTG
HHHHHHHHHEEEEECCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHH
IVAELSKSGMSDSWIMRNIGMDKNELLRFKQISGLAELFRDRSFGLSDDWLEE
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]