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The map label for this gene is rpoE [C]

Identifier: 150006107

GI number: 150006107

Start: 4481584

End: 4482090

Strand: Reverse

Name: rpoE [C]

Synonym: BVU_3616

Alternate gene names: 150006107

Gene position: 4482090-4481584 (Counterclockwise)

Preceding gene: 150006108

Following gene: 150006106

Centisome position: 86.81

GC content: 44.97

Gene sequence:

>507_bases
ATGGAACAAAATAGATTTGAAATAGAGGCAAAACGAATGCGGCCGGCTTTGTTAAGAATGGCTATCCGTTATTTGGAAAA
CTCCGACGAGGCAGAAGATGCAGTGCAAGATGCACTGTTGAAACTTTGGTTTCTTCGTGACCGTCTGGACCAATACCGCA
GCGTGGATGCATTGGCTATTGTTATAACCAAGCATTTGTGCATCAACCGTCTGCGAGGCACTCGGATAGAGAAAGTCGAT
TTGGAGCAGGGCATCAGCATTGGTGGAGGTGAAAATCCTGAAATGAAACTGGTAGAGGAAGAGAATATGCAGGAGATACT
GGAAGTAATAGGTACTTTGCCTGACTTGCAACAGTCTATTCTCCGCATGAAGCACCTGGAAGGTTTCGAAGTAGAGGAGA
TAGCCCGTCTCACAGGAAGTACGCCGGTGGCGGTACGAACCAATTTGTCGAGAGCTAGAAAAAGAGTAAAAGAACAATTT
ATGATACACAGTAAGGTATGGAATTAG

Upstream 100 bases:

>100_bases
CCCATACGGTTATTGGTATATTGGTAAATTGACATGTCAGCAAATTTTTTTTTCATTTTGATGTAACGTTTCCCTACCTC
TATGTGTCATACTGGTGAAC

Downstream 100 bases:

>100_bases
ATAAGAGGAATATAGAAGAATACATTAACCGTTTCCTGGAAGGGGAGACCACGAATGCCGAGGAGCAGGCTATTTATCGC
TTCTTCCATACAGGGGATGT

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-70 Region 4 Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; Extracytoplasmic Function AlteRNAtive Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Factor Sigma-54 SigL

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MEQNRFEIEAKRMRPALLRMAIRYLENSDEAEDAVQDALLKLWFLRDRLDQYRSVDALAIVITKHLCINRLRGTRIEKVD
LEQGISIGGGENPEMKLVEEENMQEILEVIGTLPDLQQSILRMKHLEGFEVEEIARLTGSTPVAVRTNLSRARKRVKEQF
MIHSKVWN

Sequences:

>Translated_168_residues
MEQNRFEIEAKRMRPALLRMAIRYLENSDEAEDAVQDALLKLWFLRDRLDQYRSVDALAIVITKHLCINRLRGTRIEKVD
LEQGISIGGGENPEMKLVEEENMQEILEVIGTLPDLQQSILRMKHLEGFEVEEIARLTGSTPVAVRTNLSRARKRVKEQF
MIHSKVWN
>Mature_168_residues
MEQNRFEIEAKRMRPALLRMAIRYLENSDEAEDAVQDALLKLWFLRDRLDQYRSVDALAIVITKHLCINRLRGTRIEKVD
LEQGISIGGGENPEMKLVEEENMQEILEVIGTLPDLQQSILRMKHLEGFEVEEIARLTGSTPVAVRTNLSRARKRVKEQF
MIHSKVWN

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19542; Mature: 19542

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQNRFEIEAKRMRPALLRMAIRYLENSDEAEDAVQDALLKLWFLRDRLDQYRSVDALAI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VITKHLCINRLRGTRIEKVDLEQGISIGGGENPEMKLVEEENMQEILEVIGTLPDLQQSI
HHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHH
LRMKHLEGFEVEEIARLTGSTPVAVRTNLSRARKRVKEQFMIHSKVWN
HHHHHCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQNRFEIEAKRMRPALLRMAIRYLENSDEAEDAVQDALLKLWFLRDRLDQYRSVDALAI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VITKHLCINRLRGTRIEKVDLEQGISIGGGENPEMKLVEEENMQEILEVIGTLPDLQQSI
HHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHH
LRMKHLEGFEVEEIARLTGSTPVAVRTNLSRARKRVKEQFMIHSKVWN
HHHHHCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA