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The map label for this gene is ybbA [H]

Identifier: 150006100

GI number: 150006100

Start: 4475379

End: 4476023

Strand: Reverse

Name: ybbA [H]

Synonym: BVU_3609

Alternate gene names: 150006100

Gene position: 4476023-4475379 (Counterclockwise)

Preceding gene: 150006101

Following gene: 150006099

Centisome position: 86.69

GC content: 45.12

Gene sequence:

>645_bases
ATGAACACTATAGAATTACAACAGACCCTCCCTGCCGTTTTTGCAGGGAGGGATTCTATTATATCTGATGTCTGGCATCA
GTCGTTGACTCTGAAGCGTGGAGAAGCTTATTTGGTGGAGGCAGCGTCCGGTACAGGAAAATCATCGCTTTGTAGCTACA
TATACGGATACCGTAACGACTATCAAGGTATCATCTGTTTTGACGGGAAAAATATTCGTACGCTTTCGGTGCGCGACTGG
GTGGAGATTCGGAAATGTTCCATCAGTATGTTGTTTCAGGAATTACGTTTGTTTACAGAACTGACAGCGTGGGAGAATGT
GCAGTTGAAGAATTCGCTGACCGGATTTAAATCTAAGAAAGAAATCAAGGCTTGGTTTGAACAGTTCGGCATTGCCGATA
AATGGGATACGCCAATAGCTAAAATGTCTTTCGGACAACAGCAGCGTGTTGCGTTGGTCCGCGCCCTTTGCCAACCTTTC
GATTTTATTTTTCTGGATGAACCTATCAGCCATCTGGATGAGGAGAATGGGCGGATTATGTCCCGGATATTGGTGGAGGA
AGCGGATAGACAGGGGGCAGGTATCATTGTGACTTCTATCGGCAAGCATTTGGAGTTGAACTACACAAAAACGTTGAAGC
TATGA

Upstream 100 bases:

>100_bases
ATGTGATGGCTCCCGATTGGAAAAGCGCCCAAATGAATATTGTTATGAAAGATAAAGAGGTCAACGTGCTACAGTTGATT
GTACGTGGATTGGAAAATTT

Downstream 100 bases:

>100_bases
GGTTGGTCTGGAAATTATTACGTCAGCATATCAGCTTTTCACAATTGGCGGGTTTTTTCTTTGCCAATCTGTGCGGTATG
GTCATTGTGTTGCTGAGTGT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNTIELQQTLPAVFAGRDSIISDVWHQSLTLKRGEAYLVEAASGTGKSSLCSYIYGYRNDYQGIICFDGKNIRTLSVRDW
VEIRKCSISMLFQELRLFTELTAWENVQLKNSLTGFKSKKEIKAWFEQFGIADKWDTPIAKMSFGQQQRVALVRALCQPF
DFIFLDEPISHLDEENGRIMSRILVEEADRQGAGIIVTSIGKHLELNYTKTLKL

Sequences:

>Translated_214_residues
MNTIELQQTLPAVFAGRDSIISDVWHQSLTLKRGEAYLVEAASGTGKSSLCSYIYGYRNDYQGIICFDGKNIRTLSVRDW
VEIRKCSISMLFQELRLFTELTAWENVQLKNSLTGFKSKKEIKAWFEQFGIADKWDTPIAKMSFGQQQRVALVRALCQPF
DFIFLDEPISHLDEENGRIMSRILVEEADRQGAGIIVTSIGKHLELNYTKTLKL
>Mature_214_residues
MNTIELQQTLPAVFAGRDSIISDVWHQSLTLKRGEAYLVEAASGTGKSSLCSYIYGYRNDYQGIICFDGKNIRTLSVRDW
VEIRKCSISMLFQELRLFTELTAWENVQLKNSLTGFKSKKEIKAWFEQFGIADKWDTPIAKMSFGQQQRVALVRALCQPF
DFIFLDEPISHLDEENGRIMSRILVEEADRQGAGIIVTSIGKHLELNYTKTLKL

Specific function: Unknown

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1786703, Length=218, Percent_Identity=29.8165137614679, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787105, Length=174, Percent_Identity=31.0344827586207, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081834, Length=186, Percent_Identity=29.0322580645161, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786253, Length=151, Percent_Identity=35.0993377483444, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786398, Length=195, Percent_Identity=30.2564102564103, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789873, Length=199, Percent_Identity=27.6381909547739, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1789672, Length=152, Percent_Identity=32.8947368421053, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1789032, Length=153, Percent_Identity=28.1045751633987, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1788761, Length=167, Percent_Identity=29.940119760479, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787029, Length=182, Percent_Identity=30.2197802197802, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081709, Length=173, Percent_Identity=30.635838150289, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786872, Length=162, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789991, Length=164, Percent_Identity=30.4878048780488, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87081791, Length=180, Percent_Identity=30, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790534, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790544, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788540, Length=217, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=181, Percent_Identity=31.4917127071823, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24452; Mature: 24452

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTIELQQTLPAVFAGRDSIISDVWHQSLTLKRGEAYLVEAASGTGKSSLCSYIYGYRND
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCEEEEEECCCCCHHHHHHHHHHHCCC
YQGIICFDGKNIRTLSVRDWVEIRKCSISMLFQELRLFTELTAWENVQLKNSLTGFKSKK
CCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCHH
EIKAWFEQFGIADKWDTPIAKMSFGQQQRVALVRALCQPFDFIFLDEPISHLDEENGRIM
HHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCHHH
SRILVEEADRQGAGIIVTSIGKHLELNYTKTLKL
HHHHHHHHCCCCCCEEEEECCCEEEECEEEEECC
>Mature Secondary Structure
MNTIELQQTLPAVFAGRDSIISDVWHQSLTLKRGEAYLVEAASGTGKSSLCSYIYGYRND
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCEEEEEECCCCCHHHHHHHHHHHCCC
YQGIICFDGKNIRTLSVRDWVEIRKCSISMLFQELRLFTELTAWENVQLKNSLTGFKSKK
CCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCHH
EIKAWFEQFGIADKWDTPIAKMSFGQQQRVALVRALCQPFDFIFLDEPISHLDEENGRIM
HHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCHHH
SRILVEEADRQGAGIIVTSIGKHLELNYTKTLKL
HHHHHHHHCCCCCCEEEEECCCEEEECEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]