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The map label for this gene is rbpA [H]

Identifier: 150005753

GI number: 150005753

Start: 4076205

End: 4076450

Strand: Reverse

Name: rbpA [H]

Synonym: BVU_3246

Alternate gene names: 150005753

Gene position: 4076450-4076205 (Counterclockwise)

Preceding gene: 150005755

Following gene: 150005739

Centisome position: 78.95

GC content: 36.59

Gene sequence:

>246_bases
ATGAATTTGTATATTGGAAACCTTAACTATAATGTTAGGGAAGGTGATTTGAGAGGTGTAATGGAAGAGTATGGAACAGT
AGCTTCAGTAAAACTTATTACTGACCGTGAAACACGTCGTTCTAAAGGCTTTGCTTTTGTAGAAATGCCTAATGATGACG
AAGCCAAAGAAGCTATCAAGCAATTGAACGGTGCAGAATATGTAAACCGTACTATGGTTGTAAAAGAAGCACTTCCTAAA
GCATAA

Upstream 100 bases:

>100_bases
GATTGACTCAATTCATCTCACACTTGAACCGTTTCTATTCTTCTAACTAAATTTTTAAATTCAAAGTTTACTTAATTATT
TATTTATCAATTTTTATTTT

Downstream 100 bases:

>100_bases
GGAATTAGACATTCCACATCACATAATGGCGACAGAGTGAATCTCTATCGCCATTTTTTCTTGAACAGCTTTTGAAAATA
CATGAAAGGCTTATGAATAA

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MNLYIGNLNYNVREGDLRGVMEEYGTVASVKLITDRETRRSKGFAFVEMPNDDEAKEAIKQLNGAEYVNRTMVVKEALPK
A

Sequences:

>Translated_81_residues
MNLYIGNLNYNVREGDLRGVMEEYGTVASVKLITDRETRRSKGFAFVEMPNDDEAKEAIKQLNGAEYVNRTMVVKEALPK
A
>Mature_81_residues
MNLYIGNLNYNVREGDLRGVMEEYGTVASVKLITDRETRRSKGFAFVEMPNDDEAKEAIKQLNGAEYVNRTMVVKEALPK
A

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI35493811, Length=74, Percent_Identity=44.5945945945946, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI4757926, Length=74, Percent_Identity=44.5945945945946, Blast_Score=73, Evalue=6e-14,
Organism=Homo sapiens, GI116734694, Length=74, Percent_Identity=40.5405405405405, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI116734698, Length=74, Percent_Identity=40.5405405405405, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI116734696, Length=74, Percent_Identity=40.5405405405405, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=38.6666666666667, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=38.1578947368421, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508587, Length=77, Percent_Identity=36.3636363636364, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=35.0649350649351, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24582417, Length=74, Percent_Identity=47.2972972972973, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI45550943, Length=74, Percent_Identity=47.2972972972973, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24582419, Length=74, Percent_Identity=47.2972972972973, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24582423, Length=74, Percent_Identity=47.2972972972973, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24582421, Length=74, Percent_Identity=47.2972972972973, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI19920866, Length=74, Percent_Identity=47.2972972972973, Blast_Score=76, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24582412, Length=74, Percent_Identity=47.2972972972973, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9170; Mature: 9170

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLYIGNLNYNVREGDLRGVMEEYGTVASVKLITDRETRRSKGFAFVEMPNDDEAKEAIK
CEEEECCCCCEEECCHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHH
QLNGAEYVNRTMVVKEALPKA
HCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLYIGNLNYNVREGDLRGVMEEYGTVASVKLITDRETRRSKGFAFVEMPNDDEAKEAIK
CEEEECCCCCEEECCHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHH
QLNGAEYVNRTMVVKEALPKA
HCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]