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The map label for this gene is yjgF [C]

Identifier: 150005451

GI number: 150005451

Start: 3728551

End: 3728928

Strand: Direct

Name: yjgF [C]

Synonym: BVU_2934

Alternate gene names: 150005451

Gene position: 3728551-3728928 (Clockwise)

Preceding gene: 150005445

Following gene: 150005452

Centisome position: 72.21

GC content: 43.39

Gene sequence:

>378_bases
ATGAAAAAAGTGATTTTTACAGAAAAGGCTCCTGCTGCTATAGGTCCTTACAGTCAAGCTGTTGAAGTGAATGGTATGGT
ATTCCTGTCAGGTCAGATTCCCGTTGATCCTGCTACCGGTGAATTTGTTCCGGGAGGAGTGACTGAACAAACTACCCAGG
TTTTTGAGAATATCAAGAATGTATTGGCAGAAGCCGGTCTGACTACCGCTAATATCGTAAAAACAACCGTATTTTTGGCA
GATATGTCTTTGTTTGCTGAAATGAACGCTGTTTATGCCAAGTATTTCGAAGGAGATTTCCCTGCCCGTTCTGCTGTAGC
TGTTAAGGCTTTGCCGAAAGGAGCGCTTGTGGAGATAGAGAGTATCGCAGTGAGATAA

Upstream 100 bases:

>100_bases
AATAGGTCAGATTGTTCAGTAGAGTCTGCATGAAATAGCGAAAAAAATACTAATTTAGCCCGTCAAATTTGATTTTTACT
TAATTATAAATAGAGAAAAG

Downstream 100 bases:

>100_bases
CGAGCTTTTCGCCACCGATTGCACGGATTGATGCAGATTGTTTCTATTGAAAAGCAATTGCTTGATATGGAACCTGTGTC
AATCAGTGTAGTCTGTAGTG

Product: endoribonuclease L-PSP, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKKVIFTEKAPAAIGPYSQAVEVNGMVFLSGQIPVDPATGEFVPGGVTEQTTQVFENIKNVLAEAGLTTANIVKTTVFLA
DMSLFAEMNAVYAKYFEGDFPARSAVAVKALPKGALVEIESIAVR

Sequences:

>Translated_125_residues
MKKVIFTEKAPAAIGPYSQAVEVNGMVFLSGQIPVDPATGEFVPGGVTEQTTQVFENIKNVLAEAGLTTANIVKTTVFLA
DMSLFAEMNAVYAKYFEGDFPARSAVAVKALPKGALVEIESIAVR
>Mature_125_residues
MKKVIFTEKAPAAIGPYSQAVEVNGMVFLSGQIPVDPATGEFVPGGVTEQTTQVFENIKNVLAEAGLTTANIVKTTVFLA
DMSLFAEMNAVYAKYFEGDFPARSAVAVKALPKGALVEIESIAVR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=49.6, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=52.34375, Blast_Score=126, Evalue=5e-31,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=49.21875, Blast_Score=126, Evalue=6e-31,
Organism=Escherichia coli, GI1787245, Length=122, Percent_Identity=31.9672131147541, Blast_Score=72, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=48.780487804878, Blast_Score=122, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=48.780487804878, Blast_Score=122, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=48.780487804878, Blast_Score=122, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=50, Blast_Score=116, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=50.4854368932039, Blast_Score=105, Evalue=2e-24,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=43.5483870967742, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13255; Mature: 13255

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVIFTEKAPAAIGPYSQAVEVNGMVFLSGQIPVDPATGEFVPGGVTEQTTQVFENIKN
CCCEEECCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLAEAGLTTANIVKTTVFLADMSLFAEMNAVYAKYFEGDFPARSAVAVKALPKGALVEIE
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEE
SIAVR
EEECC
>Mature Secondary Structure
MKKVIFTEKAPAAIGPYSQAVEVNGMVFLSGQIPVDPATGEFVPGGVTEQTTQVFENIKN
CCCEEECCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLAEAGLTTANIVKTTVFLADMSLFAEMNAVYAKYFEGDFPARSAVAVKALPKGALVEIE
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEE
SIAVR
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]