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The map label for this gene is radC [C]

Identifier: 150005007

GI number: 150005007

Start: 3173864

End: 3174316

Strand: Direct

Name: radC [C]

Synonym: BVU_2472

Alternate gene names: 150005007

Gene position: 3173864-3174316 (Clockwise)

Preceding gene: 150005006

Following gene: 150005008

Centisome position: 61.47

GC content: 42.38

Gene sequence:

>453_bases
ATGAAAACAACAGAATTTACCATGCCGGAAATCACTATCTCTTATAAAGACAATGTAAAAGCATCCGAAAGGGTGAAAAT
ACTCTCATCCGAAACGTCCTACTCTTACCTGAAACCGTTCTATATCGAATGTATGGAACACCACGAAGAAAGTTATGTAA
TGTTCCTCAACCGTGCTAACAAGGCTTTAGGCGTTTCCCTTATCTCTAAAGGCGGCATGGCTGAAACTGTAATGGACGTG
AAAATCATCCTGCAAACCGCCCTGAAAGTCCATGCTTCGGGCATAATCCTCTCACATAACCACCCATCGGGTAACCTACG
TCCGAGTGAACCGGACAAACAAATCACCTCAAAAATAAAAGAAGCCTGCAAGGTCTTGGATTTACACTTGTTAGACCATA
TCATCCTGACAGAAGAAAGCTATTATAGCTTTGCAGACGAGGGGCTTATCTAA

Upstream 100 bases:

>100_bases
ACCTACGGGTCGTGTTTTTTGAAAAGATATGGTTGAAGTCCCCGCCAAACTGTGGGTGTCCGGCAAAATTTCTTATTGTT
TAATTTAAAATTCAGTAGTC

Downstream 100 bases:

>100_bases
GCCCTTTTTTTTGTTACTGGCAACAAAAACACAATATCCTACTTTTAAAATAAAACCATTTTCCCTATTTCTCTTATTGT
AAATCTTCCTCTTAGGCAGT

Product: putative DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKTTEFTMPEITISYKDNVKASERVKILSSETSYSYLKPFYIECMEHHEESYVMFLNRANKALGVSLISKGGMAETVMDV
KIILQTALKVHASGIILSHNHPSGNLRPSEPDKQITSKIKEACKVLDLHLLDHIILTEESYYSFADEGLI

Sequences:

>Translated_150_residues
MKTTEFTMPEITISYKDNVKASERVKILSSETSYSYLKPFYIECMEHHEESYVMFLNRANKALGVSLISKGGMAETVMDV
KIILQTALKVHASGIILSHNHPSGNLRPSEPDKQITSKIKEACKVLDLHLLDHIILTEESYYSFADEGLI
>Mature_150_residues
MKTTEFTMPEITISYKDNVKASERVKILSSETSYSYLKPFYIECMEHHEESYVMFLNRANKALGVSLISKGGMAETVMDV
KIILQTALKVHASGIILSHNHPSGNLRPSEPDKQITSKIKEACKVLDLHLLDHIILTEESYYSFADEGLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=133, Percent_Identity=34.5864661654135, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1788997, Length=126, Percent_Identity=31.7460317460317, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI2367100, Length=126, Percent_Identity=29.3650793650794, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788312, Length=102, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 16937; Mature: 16937

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTEFTMPEITISYKDNVKASERVKILSSETSYSYLKPFYIECMEHHEESYVMFLNRAN
CCCCCCCCCEEEEEECCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
KALGVSLISKGGMAETVMDVKIILQTALKVHASGIILSHNHPSGNLRPSEPDKQITSKIK
CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHH
EACKVLDLHLLDHIILTEESYYSFADEGLI
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
>Mature Secondary Structure
MKTTEFTMPEITISYKDNVKASERVKILSSETSYSYLKPFYIECMEHHEESYVMFLNRAN
CCCCCCCCCEEEEEECCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
KALGVSLISKGGMAETVMDVKIILQTALKVHASGIILSHNHPSGNLRPSEPDKQITSKIK
CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHH
EACKVLDLHLLDHIILTEESYYSFADEGLI
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA