| Definition | Bacteroides vulgatus ATCC 8482 chromosome, complete genome. |
|---|---|
| Accession | NC_009614 |
| Length | 5,163,189 |
Click here to switch to the map view.
The map label for this gene is 150004890
Identifier: 150004890
GI number: 150004890
Start: 3031558
End: 3033042
Strand: Direct
Name: 150004890
Synonym: BVU_2353
Alternate gene names: NA
Gene position: 3031558-3033042 (Clockwise)
Preceding gene: 150004889
Following gene: 150004891
Centisome position: 58.71
GC content: 40.67
Gene sequence:
>1485_bases ATGAAAAAACAAGTAATATCTCTATTTTTAGCCTTTGGCATATCGTTGGTTGCCGGAGCGCAGCCACAAGAAAAGCGACG TGCCATCACTTTGGAGGAAGCCATTACTATTGCCCGTGTGCAAAGTGTAGATGCGGCCGTAGCTTTAAACGAGCTGAAAA CTGCTTATTGGGAATATCGTACTTTCCGTGCGGATTTGCTTCCGGAAATGAATTTTGAAGCCACTATTCCCAGCTATAAT AAGAAGTATAATTCTTATCAGCAGGATAACGGTGCTTATACATTTGTACGTAATAATTATATGGAAATGAATGGTGAAGT TTCCATCGATCAGAATATTTGGTTGACCGGTGGTAAACTCTCATTGAATACCTCTCTTGATTTCTTGAAACAACTGGATG GAGATAAATCAAAACGATATATGTCTGTTCCTGTGGCATTGACTTTGGAACAACCTATTTTCGGAGTGAATACAATTAAA TGGAACCGCCGCATCGAACCGGTGAGATACGCTGAAGCTAAAGCCGCATTTCTTACTGCAACCGAAGAGGTAACCATGAC TACTATCAATTATTTTTTCAATTTGTTGCTGGCCAAGGAAAATGTAGGCATTGCCCGACAGAATCTGAAGAATGCAGATA AACTGTATGAAGTGGCTAAGGCAAAGCGTAGCATGGGGCAGATCAGTGAAAATGATTTGTTGCAATTGGAACTGAATGTA TTGAATGCCCGTTCTACGTTGACTGAAAATGAAAGCAACTTGAAAAGTAATATGTTCAAACTCCGTTCATTTCTGGCATT AGGAGAGGATGAGGAACTGGAGCCGGTTGTTCCCGAAACGATTCCGACTGTTTTGCTGAACTATCCGGATGTTTTGGACA AAGCACTTGCCAATAATTCATTTGCACATAATATTCGTCGCCGCCAGTTGGAAGCAGATTTTGAAGTGGCTAAGGCGAAA GGTAATTTACGTGAAATCAAGCTCTATGCACAGGTAGGTTTTACAGGAACAGACAATGAATTTAATAGTGCATACCGCCG TTTGAAAGACAACCAGATTGTGGAAGTCGGTTTTAAGATTCCTATTCTTGACTGGGGAAAACGTCGTGGTCAGGTAAAGA TTGCTCAAAGTAACCGCGATGTGACCGAAAGCAAGTTACGTCAGGAAACCATGAATTTCAATCAGAATCTGTTTATCCTT GTAGAACAGTTCAATAATCAGCAGGCCCAGTTGCAGATAGCAGACGATGCGGACAAGATTGCCCAGAAACGTTACAGTAC CAATGTGGAAACCTTCATGGTTGGTAAAATCTCGACATTGGATTTGAATGACTCCCAGACAAAGAAAGATGAGGCTCGTC AGAAGCATATCAATGAGTTGTTCTATTATTGGTACTATTATTACCAGTTGCGCAGCTTGACATTGTGGGATTTCAATACC AATACTAATATTGATGCCGATTTCGAAAAGATTATCAAACAATAG
Upstream 100 bases:
>100_bases ATTTCGGACACTCCATTTTTGTTGTAAGGTGTTATAAAACAGTGAAATAGTTTTTTGGCATACCATTTGCCTTACCTTTG ATAAAAAGAATAATAACGCA
Downstream 100 bases:
>100_bases GATTTTTACTATTCAATTCTGTTTGAATATAAAATGGGGTTGTCTTTGTACTTATTAAAATAATAATTTCTACATTTGCA GTATTATGATATTAATTATA
Product: putative outer membrane protein OprM precursor
Products: NA
Alternate protein names: Outer Membrane Protein lC; Outer Membrane Protein; Outer Membrane Protein OprM; ABC Transport System Exported Protein; Outer Membrane Lipoprotein SilC; Exported Outer Membrane Protein; ABC Transporter Exported Protein; Outer Membrane Protein-Like Protein
Number of amino acids: Translated: 494; Mature: 494
Protein sequence:
>494_residues MKKQVISLFLAFGISLVAGAQPQEKRRAITLEEAITIARVQSVDAAVALNELKTAYWEYRTFRADLLPEMNFEATIPSYN KKYNSYQQDNGAYTFVRNNYMEMNGEVSIDQNIWLTGGKLSLNTSLDFLKQLDGDKSKRYMSVPVALTLEQPIFGVNTIK WNRRIEPVRYAEAKAAFLTATEEVTMTTINYFFNLLLAKENVGIARQNLKNADKLYEVAKAKRSMGQISENDLLQLELNV LNARSTLTENESNLKSNMFKLRSFLALGEDEELEPVVPETIPTVLLNYPDVLDKALANNSFAHNIRRRQLEADFEVAKAK GNLREIKLYAQVGFTGTDNEFNSAYRRLKDNQIVEVGFKIPILDWGKRRGQVKIAQSNRDVTESKLRQETMNFNQNLFIL VEQFNNQQAQLQIADDADKIAQKRYSTNVETFMVGKISTLDLNDSQTKKDEARQKHINELFYYWYYYYQLRSLTLWDFNT NTNIDADFEKIIKQ
Sequences:
>Translated_494_residues MKKQVISLFLAFGISLVAGAQPQEKRRAITLEEAITIARVQSVDAAVALNELKTAYWEYRTFRADLLPEMNFEATIPSYN KKYNSYQQDNGAYTFVRNNYMEMNGEVSIDQNIWLTGGKLSLNTSLDFLKQLDGDKSKRYMSVPVALTLEQPIFGVNTIK WNRRIEPVRYAEAKAAFLTATEEVTMTTINYFFNLLLAKENVGIARQNLKNADKLYEVAKAKRSMGQISENDLLQLELNV LNARSTLTENESNLKSNMFKLRSFLALGEDEELEPVVPETIPTVLLNYPDVLDKALANNSFAHNIRRRQLEADFEVAKAK GNLREIKLYAQVGFTGTDNEFNSAYRRLKDNQIVEVGFKIPILDWGKRRGQVKIAQSNRDVTESKLRQETMNFNQNLFIL VEQFNNQQAQLQIADDADKIAQKRYSTNVETFMVGKISTLDLNDSQTKKDEARQKHINELFYYWYYYYQLRSLTLWDFNT NTNIDADFEKIIKQ >Mature_494_residues MKKQVISLFLAFGISLVAGAQPQEKRRAITLEEAITIARVQSVDAAVALNELKTAYWEYRTFRADLLPEMNFEATIPSYN KKYNSYQQDNGAYTFVRNNYMEMNGEVSIDQNIWLTGGKLSLNTSLDFLKQLDGDKSKRYMSVPVALTLEQPIFGVNTIK WNRRIEPVRYAEAKAAFLTATEEVTMTTINYFFNLLLAKENVGIARQNLKNADKLYEVAKAKRSMGQISENDLLQLELNV LNARSTLTENESNLKSNMFKLRSFLALGEDEELEPVVPETIPTVLLNYPDVLDKALANNSFAHNIRRRQLEADFEVAKAK GNLREIKLYAQVGFTGTDNEFNSAYRRLKDNQIVEVGFKIPILDWGKRRGQVKIAQSNRDVTESKLRQETMNFNQNLFIL VEQFNNQQAQLQIADDADKIAQKRYSTNVETFMVGKISTLDLNDSQTKKDEARQKHINELFYYWYYYYQLRSLTLWDFNT NTNIDADFEKIIKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56978; Mature: 56978
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQVISLFLAFGISLVAGAQPQEKRRAITLEEAITIARVQSVDAAVALNELKTAYWEYR CCHHHHHHHHHHHHHHHCCCCCHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFRADLLPEMNFEATIPSYNKKYNSYQQDNGAYTFVRNNYMEMNGEVSIDQNIWLTGGKL HHHHHHCCCCCCEECCCCHHCCCCCCCCCCCCEEEEECCEEEECCEEEECCEEEEECCEE SLNTSLDFLKQLDGDKSKRYMSVPVALTLEQPIFGVNTIKWNRRIEPVRYAEAKAAFLTA EECCHHHHHHHCCCCCCCEEEECCEEEEECCCCCCCEEEEECCCCCCCHHHHHHEEEEEE TEEVTMTTINYFFNLLLAKENVGIARQNLKNADKLYEVAKAKRSMGQISENDLLQLELNV CCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEE LNARSTLTENESNLKSNMFKLRSFLALGEDEELEPVVPETIPTVLLNYPDVLDKALANNS ECCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCH FAHNIRRRQLEADFEVAKAKGNLREIKLYAQVGFTGTDNEFNSAYRRLKDNQIVEVGFKI HHHHHHHHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEE PILDWGKRRGQVKIAQSNRDVTESKLRQETMNFNQNLFILVEQFNNQQAQLQIADDADKI EEECCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCHHHH AQKRYSTNVETFMVGKISTLDLNDSQTKKDEARQKHINELFYYWYYYYQLRSLTLWDFNT HHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC NTNIDADFEKIIKQ CCCCCCHHHHHHCC >Mature Secondary Structure MKKQVISLFLAFGISLVAGAQPQEKRRAITLEEAITIARVQSVDAAVALNELKTAYWEYR CCHHHHHHHHHHHHHHHCCCCCHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFRADLLPEMNFEATIPSYNKKYNSYQQDNGAYTFVRNNYMEMNGEVSIDQNIWLTGGKL HHHHHHCCCCCCEECCCCHHCCCCCCCCCCCCEEEEECCEEEECCEEEECCEEEEECCEE SLNTSLDFLKQLDGDKSKRYMSVPVALTLEQPIFGVNTIKWNRRIEPVRYAEAKAAFLTA EECCHHHHHHHCCCCCCCEEEECCEEEEECCCCCCCEEEEECCCCCCCHHHHHHEEEEEE TEEVTMTTINYFFNLLLAKENVGIARQNLKNADKLYEVAKAKRSMGQISENDLLQLELNV CCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEE LNARSTLTENESNLKSNMFKLRSFLALGEDEELEPVVPETIPTVLLNYPDVLDKALANNS ECCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCH FAHNIRRRQLEADFEVAKAKGNLREIKLYAQVGFTGTDNEFNSAYRRLKDNQIVEVGFKI HHHHHHHHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEE PILDWGKRRGQVKIAQSNRDVTESKLRQETMNFNQNLFILVEQFNNQQAQLQIADDADKI EEECCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCHHHH AQKRYSTNVETFMVGKISTLDLNDSQTKKDEARQKHINELFYYWYYYYQLRSLTLWDFNT HHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC NTNIDADFEKIIKQ CCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA