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The map label for this gene is xerC [H]

Identifier: 150004395

GI number: 150004395

Start: 2389560

End: 2390720

Strand: Direct

Name: xerC [H]

Synonym: BVU_1842

Alternate gene names: 150004395

Gene position: 2389560-2390720 (Clockwise)

Preceding gene: 150004392

Following gene: 150004396

Centisome position: 46.28

GC content: 31.78

Gene sequence:

>1161_bases
ATGAGGAAAATCAGTTATCGTTTCGTTTACAATCGAAAAAAAAGTTTAAATGACAGAGGGACCGCTTTGGTCCAAGTTGA
AGCCTACTTGAATAAAAAGAAAGTGTATTTTTCCACACATGTTTATTTACGGCCAGAACAATGGGATGTAAAAAGGAAAA
TCATCAAAGATCATCCTAACCAAGATGCGCTGAATGGCATGCTTAATGAATTTATTATTGAATTAGAGAAAAAAGAATTA
AGTTTGTGGAGGCAAGGAAAGACAATAACCTTAAGCCTCATAAAAGAAGAGTTCAAATCGAATACAGATGCTTCATTCTT
AGGGTTTGCGCGTAAAGAAATAATGTCTTCTCAGCTAAAAGATAGCACTAAGCGCAACCATTTAACAACAATATCCCTTT
TACAATCGTTCAAACCGACAATTGAGTTTGAAGACTTAACCTATAATTTCGTTACGGATTTTGAAAAAAATCTTTATGAA
TCTGGATATCAAACAAATACAGTAGCCAAGCATATGAAGCATTTGAAATCTTTTGTTAATGCTGCAATTAATAAAGGATA
CATTGATCCCAATAACTATGCCTTCAGAAGATATAAAATTAAAATGAAGGAAGGAAAACATGTTTTTTTATTACCGGAAG
AAATGAAAAAATTGGAAGAAGTGTCTTTGACAGGAAGAAATAGTTGTCTGGAACATACTCTTGATGCATTTTTATTTTGC
TGCTATACGGGATTGCGGTATTCTGATTTTGTGAATTTGAATGAGAAAAATATCGTAAAAATGGATGGAAAATTATGGCT
AATCTTTGACTCTGTCAAAACAGGTACAGAAGTGAAATTGCCTTTAAACTTGCTGTTTGAAGGTAAGGCTTTAACTTTAT
TACAAAAATACCAGGGAAAATGGAGTTCGTTTTTTTCAATTAAAAATAACTCAAGTGTAAATAAAGAGCTGATACGAATT
GGCAAATTAGCAAAAATAAGCAAACACTTTTCATTCCATTCTGCAAGGCATACTAATGCTACTTTATTGATATATAAAGG
TGCTAATATAACAACCGTGCAAAAATTATTAGGACATAAAAACCTTGCTACAACACAAATTTATGGAGAAGTTATGGGAA
GTACAATTATACGAGACTTGAAAAAATGTCAAAAAAGATAA

Upstream 100 bases:

>100_bases
CGTCTAATAAATATAAAGATGAGAACAAAATAGTAGGATAATGCTTTTCTACTTTTCTTTATTGCGTCTTATTATAGAAT
TTCAATTAAAGAATTAAATT

Downstream 100 bases:

>100_bases
TTAACTCTATTGTCTATACATTATCTCTTATAAAGATGAAGAAGAATCATTTTCAAAAGTGAATATAGCCTTATCTTCTT
AATAAAGTTTATCGTTTTGT

Product: tyrosine type site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MRKISYRFVYNRKKSLNDRGTALVQVEAYLNKKKVYFSTHVYLRPEQWDVKRKIIKDHPNQDALNGMLNEFIIELEKKEL
SLWRQGKTITLSLIKEEFKSNTDASFLGFARKEIMSSQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKNLYE
SGYQTNTVAKHMKHLKSFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCLEHTLDAFLFC
CYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPLNLLFEGKALTLLQKYQGKWSSFFSIKNNSSVNKELIRI
GKLAKISKHFSFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEVMGSTIIRDLKKCQKR

Sequences:

>Translated_386_residues
MRKISYRFVYNRKKSLNDRGTALVQVEAYLNKKKVYFSTHVYLRPEQWDVKRKIIKDHPNQDALNGMLNEFIIELEKKEL
SLWRQGKTITLSLIKEEFKSNTDASFLGFARKEIMSSQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKNLYE
SGYQTNTVAKHMKHLKSFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCLEHTLDAFLFC
CYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPLNLLFEGKALTLLQKYQGKWSSFFSIKNNSSVNKELIRI
GKLAKISKHFSFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEVMGSTIIRDLKKCQKR
>Mature_386_residues
MRKISYRFVYNRKKSLNDRGTALVQVEAYLNKKKVYFSTHVYLRPEQWDVKRKIIKDHPNQDALNGMLNEFIIELEKKEL
SLWRQGKTITLSLIKEEFKSNTDASFLGFARKEIMSSQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKNLYE
SGYQTNTVAKHMKHLKSFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCLEHTLDAFLFC
CYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPLNLLFEGKALTLLQKYQGKWSSFFSIKNNSSVNKELIRI
GKLAKISKHFSFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEVMGSTIIRDLKKCQKR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44924; Mature: 44924

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKISYRFVYNRKKSLNDRGTALVQVEAYLNKKKVYFSTHVYLRPEQWDVKRKIIKDHPN
CCCEEEEEEECCCCCCCCCCCEEEEEEHHHCCCEEEEEEEEEECCCHHHHHHHHHHCCCC
QDALNGMLNEFIIELEKKELSLWRQGKTITLSLIKEEFKSNTDASFLGFARKEIMSSQLK
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
DSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKNLYESGYQTNTVAKHMKHLKSFVN
HHHHHCCHHHHHHHHHCCCCEEECCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCLEHTLDAFLFC
HHHHCCCCCCCCCEEEEEEEEECCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
CYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPLNLLFEGKALTLLQKYQGK
HHCCCCHHHEECCCCCCEEEECCEEEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHCCC
WSSFFSIKNNSSVNKELIRIGKLAKISKHFSFHSARHTNATLLIYKGANITTVQKLLGHK
HHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCC
NLATTQIYGEVMGSTIIRDLKKCQKR
CCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKISYRFVYNRKKSLNDRGTALVQVEAYLNKKKVYFSTHVYLRPEQWDVKRKIIKDHPN
CCCEEEEEEECCCCCCCCCCCEEEEEEHHHCCCEEEEEEEEEECCCHHHHHHHHHHCCCC
QDALNGMLNEFIIELEKKELSLWRQGKTITLSLIKEEFKSNTDASFLGFARKEIMSSQLK
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
DSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKNLYESGYQTNTVAKHMKHLKSFVN
HHHHHCCHHHHHHHHHCCCCEEECCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCLEHTLDAFLFC
HHHHCCCCCCCCCEEEEEEEEECCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
CYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPLNLLFEGKALTLLQKYQGK
HHCCCCHHHEECCCCCCEEEECCEEEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHCCC
WSSFFSIKNNSSVNKELIRIGKLAKISKHFSFHSARHTNATLLIYKGANITTVQKLLGHK
HHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCC
NLATTQIYGEVMGSTIIRDLKKCQKR
CCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA