Click here to switch to the map view.

The map label for this gene is kdgF [H]

Identifier: 150004366

GI number: 150004366

Start: 2348673

End: 2349164

Strand: Reverse

Name: kdgF [H]

Synonym: BVU_1812

Alternate gene names: 150004366

Gene position: 2349164-2348673 (Counterclockwise)

Preceding gene: 150004373

Following gene: 150004350

Centisome position: 45.5

GC content: 42.07

Gene sequence:

>492_bases
ATGAATCGTAAAGTAAGAACCGCATTGTATGCTTGCGCCTTGATGGCACCACTACTATTGCAGAGCTGCAATGCACAAAG
TGAAAAAAAAGAGAGCAACAAAGAGTGTACTGAAGAAACAAACAAAAACACTGAAAAAAAGGTTATGAAAACAGGTAGTG
AAAACTTCATTTTTGCAGAAGGCAAAGAATGGGAACCTGCAGGCGAAGGTGTAGTGCGCCAGATCATGGGTTACAATGAT
GACATCATGGTTGTTAAAGTAAAATTTGAAAAGGGAGCTGTAGGAGCTGTCCACCATCATATCCATTCACAAGTGACCTA
TGTGGAAAGTGGAAAATTTGAGTTCACCATCAATGGTGTGAAAAAAATTGTATCGGCCGGCGACTGTCTATATAAGGAAC
CGGATGCTGTGCATGGTTGTGTATGCCTGGAGCCGGGTATGCTGATAGATTGTTTCAGCCCGATGCGTGCTGATTTCCTG
GAAAAGAAATAG

Upstream 100 bases:

>100_bases
TTTTCCTCGTATATTTTAATCACGACGAACTACCCTCCCCATATTATAAGTATATTTGAAGAAAAGTTTTAGTTATTCAT
TTTATATTAAATGCAAGATC

Downstream 100 bases:

>100_bases
ACAAGCCATATATTCCATCCACTGCAGGAGCAGATTGCTGTGCCCTCCTTTGGGCATTTAATATGCTCCTACAGTGGAAA
TGAATTCTATTTTTTAATCT

Product: putative pectin degradation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MNRKVRTALYACALMAPLLLQSCNAQSEKKESNKECTEETNKNTEKKVMKTGSENFIFAEGKEWEPAGEGVVRQIMGYND
DIMVVKVKFEKGAVGAVHHHIHSQVTYVESGKFEFTINGVKKIVSAGDCLYKEPDAVHGCVCLEPGMLIDCFSPMRADFL
EKK

Sequences:

>Translated_163_residues
MNRKVRTALYACALMAPLLLQSCNAQSEKKESNKECTEETNKNTEKKVMKTGSENFIFAEGKEWEPAGEGVVRQIMGYND
DIMVVKVKFEKGAVGAVHHHIHSQVTYVESGKFEFTINGVKKIVSAGDCLYKEPDAVHGCVCLEPGMLIDCFSPMRADFL
EKK
>Mature_163_residues
MNRKVRTALYACALMAPLLLQSCNAQSEKKESNKECTEETNKNTEKKVMKTGSENFIFAEGKEWEPAGEGVVRQIMGYND
DIMVVKVKFEKGAVGAVHHHIHSQVTYVESGKFEFTINGVKKIVSAGDCLYKEPDAVHGCVCLEPGMLIDCFSPMRADFL
EKK

Specific function: May have a role in pathogenicity [H]

COG id: COG1917

COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2 [H]

EC number: NA

Molecular weight: Translated: 18181; Mature: 18181

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKVRTALYACALMAPLLLQSCNAQSEKKESNKECTEETNKNTEKKVMKTGSENFIFAE
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEC
GKEWEPAGEGVVRQIMGYNDDIMVVKVKFEKGAVGAVHHHIHSQVTYVESGKFEFTINGV
CCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHEEEEECCEEEEEHHHH
KKIVSAGDCLYKEPDAVHGCVCLEPGMLIDCFSPMRADFLEKK
HHHHHCCCCCCCCCCCCCCEEEECCCCEEECCCHHHHHHHCCC
>Mature Secondary Structure
MNRKVRTALYACALMAPLLLQSCNAQSEKKESNKECTEETNKNTEKKVMKTGSENFIFAE
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEC
GKEWEPAGEGVVRQIMGYNDDIMVVKVKFEKGAVGAVHHHIHSQVTYVESGKFEFTINGV
CCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHEEEEECCEEEEEHHHH
KKIVSAGDCLYKEPDAVHGCVCLEPGMLIDCFSPMRADFLEKK
HHHHHCCCCCCCCCCCCCCEEEECCCCEEECCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1766386 [H]