Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 150004329

GI number: 150004329

Start: 2281603

End: 2282169

Strand: Direct

Name: rpoE [C]

Synonym: BVU_1775

Alternate gene names: 150004329

Gene position: 2281603-2282169 (Clockwise)

Preceding gene: 150004324

Following gene: 150004331

Centisome position: 44.19

GC content: 47.27

Gene sequence:

>567_bases
ATGAATCATACCGTGGAAGACTTGTCTTTGTTTAATGCTCTCCGACAGGGGGATGGTAATTCTTTTGACCATTTATTCAG
AAGGTACTATCCTATGCTGTGTGCCTATGCTCACCGCTTGGTGTCGCTGGAAGATGCCGAAGAGATTGTTCAGGAGGTGA
TGTTATGGCTGTGGGAGAATCGTGGGGATTTGATAATCGAGTCTTCATTGAATCAGTATTTGTTCAAAATGACTTATCGG
AGGGTCTTGAACCACTTGACGCGGGAACAGGTGAAAACCAAGGCGGAAGCTGCCTTTTATGAGCGGACACAGGCGGCATT
GTGTGAAGTGGACTATGGTCGTTTTGAGGAATTGGACCGGAAAATAAAAGAGGCGATGGCTGCTCTTCCCGACAGTTATC
GGGAAGCCTTTGTGATGCATCGCTTTAAGGAACTGAGTTATAAAGAAATTGCTGAAGTGCTGGATGTGTCGCCACAGACG
GTGGCTTACCGCATCCAGCAGGCATTGAAGCTGCTTCGTGTTTCCTTAAAGGATTACTTGCCTATGCTGGTATGGCTGGT
GGGCTGA

Upstream 100 bases:

>100_bases
GAATGAAAGGTATCTAAACGAAAAATGCTTTTTTTTTAAAAAAAAGTTTTTTCCGATAAAAACAACTATCTTTGTACACA
AGGAAAACAGTTATTATACT

Downstream 100 bases:

>100_bases
AAAGTATCTCCCCCGGAGTTTCCCCTGTTTTTTCTTTCAAATCCTTCAGCCTCTTCGCAAACGCCCGTCAATAAAGAAAA
GCGGCTGAAGAATTTCCTCC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-H Factor; ECF-Type RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor Protein; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF-Type RNA Polymerase; Xin-Antitoxin System Toxin Component HipA Family; RNA Polymerase Sigma-W Factor; ECF Subfamily RNA Polymerase Sigma Factor; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNHTVEDLSLFNALRQGDGNSFDHLFRRYYPMLCAYAHRLVSLEDAEEIVQEVMLWLWENRGDLIIESSLNQYLFKMTYR
RVLNHLTREQVKTKAEAAFYERTQAALCEVDYGRFEELDRKIKEAMAALPDSYREAFVMHRFKELSYKEIAEVLDVSPQT
VAYRIQQALKLLRVSLKDYLPMLVWLVG

Sequences:

>Translated_188_residues
MNHTVEDLSLFNALRQGDGNSFDHLFRRYYPMLCAYAHRLVSLEDAEEIVQEVMLWLWENRGDLIIESSLNQYLFKMTYR
RVLNHLTREQVKTKAEAAFYERTQAALCEVDYGRFEELDRKIKEAMAALPDSYREAFVMHRFKELSYKEIAEVLDVSPQT
VAYRIQQALKLLRVSLKDYLPMLVWLVG
>Mature_188_residues
MNHTVEDLSLFNALRQGDGNSFDHLFRRYYPMLCAYAHRLVSLEDAEEIVQEVMLWLWENRGDLIIESSLNQYLFKMTYR
RVLNHLTREQVKTKAEAAFYERTQAALCEVDYGRFEELDRKIKEAMAALPDSYREAFVMHRFKELSYKEIAEVLDVSPQT
VAYRIQQALKLLRVSLKDYLPMLVWLVG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22251; Mature: 22251

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHTVEDLSLFNALRQGDGNSFDHLFRRYYPMLCAYAHRLVSLEDAEEIVQEVMLWLWEN
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RGDLIIESSLNQYLFKMTYRRVLNHLTREQVKTKAEAAFYERTQAALCEVDYGRFEELDR
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KIKEAMAALPDSYREAFVMHRFKELSYKEIAEVLDVSPQTVAYRIQQALKLLRVSLKDYL
HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
PMLVWLVG
HHHHHHCC
>Mature Secondary Structure
MNHTVEDLSLFNALRQGDGNSFDHLFRRYYPMLCAYAHRLVSLEDAEEIVQEVMLWLWEN
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RGDLIIESSLNQYLFKMTYRRVLNHLTREQVKTKAEAAFYERTQAALCEVDYGRFEELDR
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KIKEAMAALPDSYREAFVMHRFKELSYKEIAEVLDVSPQTVAYRIQQALKLLRVSLKDYL
HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
PMLVWLVG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA