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The map label for this gene is yijO [C]

Identifier: 150004231

GI number: 150004231

Start: 2159593

End: 2160426

Strand: Reverse

Name: yijO [C]

Synonym: BVU_1672

Alternate gene names: 150004231

Gene position: 2160426-2159593 (Counterclockwise)

Preceding gene: 150004235

Following gene: 150004229

Centisome position: 41.84

GC content: 40.89

Gene sequence:

>834_bases
ATGGAAATATTGAGTTTACCAGAGAATGAACCGTTTATCACCGGAATAGAAGAAAATATAGATATATGCTCCAATCAGAT
CATGAAGTTAGCAGACGCATCTATTTTTCATTGCCGTAGCGGAAAAGCCCACATAGAAATTGATTTGCAGGCATACGAAG
TGACGGAGAACACCCAACTTCTGCTTCTCCCCGGCAGTATCTTCAATTGCACCTGCGCCAGCCATGATTTTACCGTTTCC
TATATTGTTTTTTCCGACACCCTTTTCAGGGAGATCACCTCACGTCTGGATCCCTCCTTCTTTCACTTTCTAAAAGAGCA
TCCATGCATTGTCATCCCTGAAGAACGTGTAAAACCATTCATCGGACTCAGCTTGGTCATGAAAGATCTTTATGAAGACA
GGGATAATAGTTTCCGCATTCAGATCTTCAAAAATTTCATTCAAAACTTCATTCTGGACTTCTATGACAAGACCCAACAC
CTGTTCCTGCAAAAAAAGACCGAAGGAATAAATCGCCAGGAAGAGATATTCAAACGTTTCATCCAATTAATTCATAAACA
TTGCACCACCCAACGTGAGGTATCTTTCTATGCAGCCGAACTATTCATCACTCCCCGTTACCTTTCCACAATCGTACAAA
ACGTATCCGGCAACACAGCCAAAAGCATTATTGACCGACATGTAATTCTTGAGATTAAAGCATTACTACAATCCACATCT
CTAAGTATTCAAGAGATCTCCAACCGATTATCTTTCCCTGACCAATCTTTTTTTGGCCGCTATTTCAAGAAACATACAGG
CAAGTCCCCTCTTCAATACCGAAACCGGTCTTAA

Upstream 100 bases:

>100_bases
GCCGACACATTCAATTATTAGCTACCATTGTTCAAATTCGGAATAGATTTCCTATTATAACAAAAATAATAGTTAATTTT
GCATCAAAACAAGAATAAAT

Downstream 100 bases:

>100_bases
AACAAAAAAAGCTGCCTCCGATAAAGAAAGCAGCTTTTTTCTGTTTATATAGGATGAATCAATTATTCAGCCAATTTATT
GTCTGAACCCAGCACGTTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Phosphomethylpyrimidine Kinase; AraC-Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcription Regulator; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; Bacterial Regulatory Helix-Turn-Helix Protein; AraC-Type Transcriptional Regulator; Transcriptional Regulator Arac Family; AraC Family Regulatory Helix-Turn-Helix Protein; AraC Family Regulatory Protein; AraC Family Transcription Regulator; Transcriptional Regulator PobR

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MEILSLPENEPFITGIEENIDICSNQIMKLADASIFHCRSGKAHIEIDLQAYEVTENTQLLLLPGSIFNCTCASHDFTVS
YIVFSDTLFREITSRLDPSFFHFLKEHPCIVIPEERVKPFIGLSLVMKDLYEDRDNSFRIQIFKNFIQNFILDFYDKTQH
LFLQKKTEGINRQEEIFKRFIQLIHKHCTTQREVSFYAAELFITPRYLSTIVQNVSGNTAKSIIDRHVILEIKALLQSTS
LSIQEISNRLSFPDQSFFGRYFKKHTGKSPLQYRNRS

Sequences:

>Translated_277_residues
MEILSLPENEPFITGIEENIDICSNQIMKLADASIFHCRSGKAHIEIDLQAYEVTENTQLLLLPGSIFNCTCASHDFTVS
YIVFSDTLFREITSRLDPSFFHFLKEHPCIVIPEERVKPFIGLSLVMKDLYEDRDNSFRIQIFKNFIQNFILDFYDKTQH
LFLQKKTEGINRQEEIFKRFIQLIHKHCTTQREVSFYAAELFITPRYLSTIVQNVSGNTAKSIIDRHVILEIKALLQSTS
LSIQEISNRLSFPDQSFFGRYFKKHTGKSPLQYRNRS
>Mature_277_residues
MEILSLPENEPFITGIEENIDICSNQIMKLADASIFHCRSGKAHIEIDLQAYEVTENTQLLLLPGSIFNCTCASHDFTVS
YIVFSDTLFREITSRLDPSFFHFLKEHPCIVIPEERVKPFIGLSLVMKDLYEDRDNSFRIQIFKNFIQNFILDFYDKTQH
LFLQKKTEGINRQEEIFKRFIQLIHKHCTTQREVSFYAAELFITPRYLSTIVQNVSGNTAKSIIDRHVILEIKALLQSTS
LSIQEISNRLSFPDQSFFGRYFKKHTGKSPLQYRNRS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32334; Mature: 32334

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILSLPENEPFITGIEENIDICSNQIMKLADASIFHCRSGKAHIEIDLQAYEVTENTQL
CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEEEECCCCEE
LLLPGSIFNCTCASHDFTVSYIVFSDTLFREITSRLDPSFFHFLKEHPCIVIPEERVKPF
EEECCCEEEEEECCCCCEEEEEEHHHHHHHHHHHHCCHHHHHHHHCCCEEEECHHHCCHH
IGLSLVMKDLYEDRDNSFRIQIFKNFIQNFILDFYDKTQHLFLQKKTEGINRQEEIFKRF
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IQLIHKHCTTQREVSFYAAELFITPRYLSTIVQNVSGNTAKSIIDRHVILEIKALLQSTS
HHHHHHHCCCHHHHHHHHHHHEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
LSIQEISNRLSFPDQSFFGRYFKKHTGKSPLQYRNRS
CHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MEILSLPENEPFITGIEENIDICSNQIMKLADASIFHCRSGKAHIEIDLQAYEVTENTQL
CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEEEECCCCEE
LLLPGSIFNCTCASHDFTVSYIVFSDTLFREITSRLDPSFFHFLKEHPCIVIPEERVKPF
EEECCCEEEEEECCCCCEEEEEEHHHHHHHHHHHHCCHHHHHHHHCCCEEEECHHHCCHH
IGLSLVMKDLYEDRDNSFRIQIFKNFIQNFILDFYDKTQHLFLQKKTEGINRQEEIFKRF
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IQLIHKHCTTQREVSFYAAELFITPRYLSTIVQNVSGNTAKSIIDRHVILEIKALLQSTS
HHHHHHHCCCHHHHHHHHHHHEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
LSIQEISNRLSFPDQSFFGRYFKKHTGKSPLQYRNRS
CHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA