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The map label for this gene is rhaS [C]

Identifier: 150004064

GI number: 150004064

Start: 1985555

End: 1986394

Strand: Reverse

Name: rhaS [C]

Synonym: BVU_1499

Alternate gene names: 150004064

Gene position: 1986394-1985555 (Counterclockwise)

Preceding gene: 150004068

Following gene: 150004063

Centisome position: 38.47

GC content: 32.98

Gene sequence:

>840_bases
ATGAAAAGAGAAAACCTACATCAACCATTCGAAATTAGTTTTAGCGAGCTTGCCGAATCCTTGCTAAAAGAGCATGAACA
TACCTTTTTTGAATTAGTATATATTCTTTCAGGAACAGGCATCCAATGGATTAACAACAATATGTTTCCTTATCATGACG
GACATTTGTTTATGATTACTCCCGGAGATACGCATTCTTTCGAAATCCATACAACAACTAAGTTTGTCGACATCAAGTTT
AACGACATATATATACATTCTTCTGTTTTCGGTGCTGAAAATATCCAAAGACTGGAGTTTATTCTTCAACATGCTAATCA
TCAACCCGGTTGTATACTAAGAAATAAAGTAGATAAGCTATTGGTGAAACCCATGATTGAAGCGATTATCAGGGAATATA
TTAACCGAAATTTATACAGCAAGGAGATTATAACACAAATAATTAATACGATTATTATTGTGGTAGCACGCAATATCGCA
ATGTTCTTGCCTGAACAGGTGGATGAATGCTCTGAGGACAAATCGCTTGACATATTGCAGTATATTCAAGCAAACATCTA
TAAAACAGGTAAAATCAGAGCAAAAGATATAAGCCAACATTTTGGCATTTCGGAGAATTATTTAGGACGATATATCAAAA
AACATACTAATGAAACTATGCAGCAATACATTTTAAACTACAAACTAAAGTTAGTAGAAAATAGATTATTACATAGTCAA
ATGAGAATTTGTGAAATCGTTGAAGAATTGGGATTTACCGATGAGAGCCATCTTAATAAGTTTTTCAAAAAGTATAGAGG
ATGCAGCCCCTCTAATTTCAGAAAGAACAATTTGAAGTAA

Upstream 100 bases:

>100_bases
TTTAAATATATTGCAAAGTTATACCGATTTTTCGGCTAATTTTAGGTATTATTTTTCGTTATTTTGGTATTAATCCGTTT
TTTAGGGCTATATTTATGGC

Downstream 100 bases:

>100_bases
ACCATATATATATCCTTGTTTTTAGAGTTATTAAAACAATAGAAATGACTATTTTTGCATTATATTTATAGATGTCTATG
ACAAATACAGAAACCATACA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC Family Two Component Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Transcription Regulator; AraC-Family Regulatory Protein; Cupin 2 Domain-Containing Protein; Two Component Transcriptional Regulator AraC Family; Response Regulator Receiver Protein

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKRENLHQPFEISFSELAESLLKEHEHTFFELVYILSGTGIQWINNNMFPYHDGHLFMITPGDTHSFEIHTTTKFVDIKF
NDIYIHSSVFGAENIQRLEFILQHANHQPGCILRNKVDKLLVKPMIEAIIREYINRNLYSKEIITQIINTIIIVVARNIA
MFLPEQVDECSEDKSLDILQYIQANIYKTGKIRAKDISQHFGISENYLGRYIKKHTNETMQQYILNYKLKLVENRLLHSQ
MRICEIVEELGFTDESHLNKFFKKYRGCSPSNFRKNNLK

Sequences:

>Translated_279_residues
MKRENLHQPFEISFSELAESLLKEHEHTFFELVYILSGTGIQWINNNMFPYHDGHLFMITPGDTHSFEIHTTTKFVDIKF
NDIYIHSSVFGAENIQRLEFILQHANHQPGCILRNKVDKLLVKPMIEAIIREYINRNLYSKEIITQIINTIIIVVARNIA
MFLPEQVDECSEDKSLDILQYIQANIYKTGKIRAKDISQHFGISENYLGRYIKKHTNETMQQYILNYKLKLVENRLLHSQ
MRICEIVEELGFTDESHLNKFFKKYRGCSPSNFRKNNLK
>Mature_279_residues
MKRENLHQPFEISFSELAESLLKEHEHTFFELVYILSGTGIQWINNNMFPYHDGHLFMITPGDTHSFEIHTTTKFVDIKF
NDIYIHSSVFGAENIQRLEFILQHANHQPGCILRNKVDKLLVKPMIEAIIREYINRNLYSKEIITQIINTIIIVVARNIA
MFLPEQVDECSEDKSLDILQYIQANIYKTGKIRAKDISQHFGISENYLGRYIKKHTNETMQQYILNYKLKLVENRLLHSQ
MRICEIVEELGFTDESHLNKFFKKYRGCSPSNFRKNNLK

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32915; Mature: 32915

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRENLHQPFEISFSELAESLLKEHEHTFFELVYILSGTGIQWINNNMFPYHDGHLFMIT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECCEEEEEE
PGDTHSFEIHTTTKFVDIKFNDIYIHSSVFGAENIQRLEFILQHANHQPGCILRNKVDKL
CCCCCEEEEEEEEEEEEEEEEEEEEECCHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LVKPMIEAIIREYINRNLYSKEIITQIINTIIIVVARNIAMFLPEQVDECSEDKSLDILQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHH
YIQANIYKTGKIRAKDISQHFGISENYLGRYIKKHTNETMQQYILNYKLKLVENRLLHSQ
HHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRICEIVEELGFTDESHLNKFFKKYRGCSPSNFRKNNLK
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRENLHQPFEISFSELAESLLKEHEHTFFELVYILSGTGIQWINNNMFPYHDGHLFMIT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECCEEEEEE
PGDTHSFEIHTTTKFVDIKFNDIYIHSSVFGAENIQRLEFILQHANHQPGCILRNKVDKL
CCCCCEEEEEEEEEEEEEEEEEEEEECCHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LVKPMIEAIIREYINRNLYSKEIITQIINTIIIVVARNIAMFLPEQVDECSEDKSLDILQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHH
YIQANIYKTGKIRAKDISQHFGISENYLGRYIKKHTNETMQQYILNYKLKLVENRLLHSQ
HHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRICEIVEELGFTDESHLNKFFKKYRGCSPSNFRKNNLK
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA