Click here to switch to the map view.

The map label for this gene is araJ [H]

Identifier: 150003918

GI number: 150003918

Start: 1802123

End: 1803283

Strand: Direct

Name: araJ [H]

Synonym: BVU_1351

Alternate gene names: 150003918

Gene position: 1802123-1803283 (Clockwise)

Preceding gene: 150003917

Following gene: 150003920

Centisome position: 34.9

GC content: 44.96

Gene sequence:

>1161_bases
ATGAAGAAGAGTTTGACGGCTTTGGCGTTCGGCACATTGGGATTGGGCATTGCCGAGTTTGTAATGATGGGCATTTTGCC
CGATGTAGCGAAGGATTTGCATATAAGTATTCCGCAAGCAGGACATTTTATTTCGGCTTATGCACTAGGTGTGTGCGTAG
GAGCACCGGGGATGGTTTTGGTGGCTCGTACCCGTCCGCTGAAACATATTCTGTTAGGTTTGATGGTTATTTATATTTGT
GGTAATTTGTGTGCTGCCGCTTCAGTGAATTATTGGATGATGTTGATGATGCGTTTTATTTCCGGATTGCCTCATGGCGC
CTTCTTTGGGGTTGGTTCCATTGTGGCGGAAAGAGTGGCTGATAAAGGAAAAAGTTCGCAGGCAGTGGCATTGATGGTGT
CGGGTATGACGATTGCCAATCTTTTTGGTGTCCCCTTAGGCACATTTATGAGTAATATAATGTCCTGGCGTATTCCTTTT
CTCTTTAATGGAGTATGGGGACTGATTACTTTGTTCTATATTTGGAAATGGGTTCCTTCACTGCCTGCTTTGCCAGATAC
AGGTTTGAAAGGGCAGTTCCGTTTTTTGAAGAATCTGGCTCCATGGTTGTTGATAATTACGACCATGTTCGGAAACGGAG
GCATCTTTTGTTGGTATAGCTATGTCACTCCTTTGATGACGCACGTGGCAGGTTTCAGTGAAAACAGTATGACTTTCATT
ATGGTGTTGGCAGGTCTTAGCATGACTGTAGGAAACTTGATGGGTGGAAAGTTTTCTGATCAGTATGGGGCTGCCCGTGT
GGTAAAATATACACAGGTTATTATGGCTTCCGGTTTGCTTGCCATTTTCTTTGCGGCTTCTGTTTCTTGGTTGGCAGTAA
TATTGATGTGTATATGTACGGCAGGATTGTTTGCTGTTTCGGCTCCACAACAATTATTGTTACTCCGGAATTCACGCGGA
GGAGAAATGATGGGAGCGGCCTGTGTGCAAGTCGCTTTTAATTTGGGCAATGCCATTGGTGCTTATGCCGGTGGGCTACC
CATAGATGCCGGATTGGGTTATCGGTATCCGGCTTTGGTGGGTGTCTTTATCGTATTGATCGGCTTTGTCGCTGTTTCCC
TTTATTCCAAAAGGGAATCGGCTTCTCTTTCCAAGATATAA

Upstream 100 bases:

>100_bases
CATTCCTTTTCTTATAAAAGTGTGCTAAAAACACTTATATCTGAAAACATAACAATTATTTTTGTACGTTTTTTAATTAA
TGGATTGTTTTTATTCAGGT

Downstream 100 bases:

>100_bases
ATTACATCTCCACTCTTTTTAACCTCTACCCGGCTACCTTCCGGATTCAGGTTGAAAGGTGTGGTCTTGTCTGTTTTGTT
ATCTACGACCATCAGTACAT

Product: MFS transport protein AraJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MKKSLTALAFGTLGLGIAEFVMMGILPDVAKDLHISIPQAGHFISAYALGVCVGAPGMVLVARTRPLKHILLGLMVIYIC
GNLCAAASVNYWMMLMMRFISGLPHGAFFGVGSIVAERVADKGKSSQAVALMVSGMTIANLFGVPLGTFMSNIMSWRIPF
LFNGVWGLITLFYIWKWVPSLPALPDTGLKGQFRFLKNLAPWLLIITTMFGNGGIFCWYSYVTPLMTHVAGFSENSMTFI
MVLAGLSMTVGNLMGGKFSDQYGAARVVKYTQVIMASGLLAIFFAASVSWLAVILMCICTAGLFAVSAPQQLLLLRNSRG
GEMMGAACVQVAFNLGNAIGAYAGGLPIDAGLGYRYPALVGVFIVLIGFVAVSLYSKRESASLSKI

Sequences:

>Translated_386_residues
MKKSLTALAFGTLGLGIAEFVMMGILPDVAKDLHISIPQAGHFISAYALGVCVGAPGMVLVARTRPLKHILLGLMVIYIC
GNLCAAASVNYWMMLMMRFISGLPHGAFFGVGSIVAERVADKGKSSQAVALMVSGMTIANLFGVPLGTFMSNIMSWRIPF
LFNGVWGLITLFYIWKWVPSLPALPDTGLKGQFRFLKNLAPWLLIITTMFGNGGIFCWYSYVTPLMTHVAGFSENSMTFI
MVLAGLSMTVGNLMGGKFSDQYGAARVVKYTQVIMASGLLAIFFAASVSWLAVILMCICTAGLFAVSAPQQLLLLRNSRG
GEMMGAACVQVAFNLGNAIGAYAGGLPIDAGLGYRYPALVGVFIVLIGFVAVSLYSKRESASLSKI
>Mature_386_residues
MKKSLTALAFGTLGLGIAEFVMMGILPDVAKDLHISIPQAGHFISAYALGVCVGAPGMVLVARTRPLKHILLGLMVIYIC
GNLCAAASVNYWMMLMMRFISGLPHGAFFGVGSIVAERVADKGKSSQAVALMVSGMTIANLFGVPLGTFMSNIMSWRIPF
LFNGVWGLITLFYIWKWVPSLPALPDTGLKGQFRFLKNLAPWLLIITTMFGNGGIFCWYSYVTPLMTHVAGFSENSMTFI
MVLAGLSMTVGNLMGGKFSDQYGAARVVKYTQVIMASGLLAIFFAASVSWLAVILMCICTAGLFAVSAPQQLLLLRNSRG
GEMMGAACVQVAFNLGNAIGAYAGGLPIDAGLGYRYPALVGVFIVLIGFVAVSLYSKRESASLSKI

Specific function: May be involved in either the transport or processing of arabinose polymers [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=388, Percent_Identity=47.1649484536082, Blast_Score=335, Evalue=2e-93,
Organism=Escherichia coli, GI1787947, Length=388, Percent_Identity=35.5670103092784, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1787808, Length=263, Percent_Identity=28.5171102661597, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693198, Length=246, Percent_Identity=23.5772357723577, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41230; Mature: 41230

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLTALAFGTLGLGIAEFVMMGILPDVAKDLHISIPQAGHFISAYALGVCVGAPGMVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCEEE
VARTRPLKHILLGLMVIYICGNLCAAASVNYWMMLMMRFISGLPHGAFFGVGSIVAERVA
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DKGKSSQAVALMVSGMTIANLFGVPLGTFMSNIMSWRIPFLFNGVWGLITLFYIWKWVPS
HCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPALPDTGLKGQFRFLKNLAPWLLIITTMFGNGGIFCWYSYVTPLMTHVAGFSENSMTFI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCHHHH
MVLAGLSMTVGNLMGGKFSDQYGAARVVKYTQVIMASGLLAIFFAASVSWLAVILMCICT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLFAVSAPQQLLLLRNSRGGEMMGAACVQVAFNLGNAIGAYAGGLPIDAGLGYRYPALV
HHHHHHCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
GVFIVLIGFVAVSLYSKRESASLSKI
HHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKSLTALAFGTLGLGIAEFVMMGILPDVAKDLHISIPQAGHFISAYALGVCVGAPGMVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCEEE
VARTRPLKHILLGLMVIYICGNLCAAASVNYWMMLMMRFISGLPHGAFFGVGSIVAERVA
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DKGKSSQAVALMVSGMTIANLFGVPLGTFMSNIMSWRIPFLFNGVWGLITLFYIWKWVPS
HCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPALPDTGLKGQFRFLKNLAPWLLIITTMFGNGGIFCWYSYVTPLMTHVAGFSENSMTFI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCHHHH
MVLAGLSMTVGNLMGGKFSDQYGAARVVKYTQVIMASGLLAIFFAASVSWLAVILMCICT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLFAVSAPQQLLLLRNSRGGEMMGAACVQVAFNLGNAIGAYAGGLPIDAGLGYRYPALV
HHHHHHCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
GVFIVLIGFVAVSLYSKRESASLSKI
HHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744033; 9278503 [H]