| Definition | Bacteroides vulgatus ATCC 8482 chromosome, complete genome. |
|---|---|
| Accession | NC_009614 |
| Length | 5,163,189 |
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The map label for this gene is cirA [C]
Identifier: 150003799
GI number: 150003799
Start: 1652406
End: 1655174
Strand: Direct
Name: cirA [C]
Synonym: BVU_1231
Alternate gene names: 150003799
Gene position: 1652406-1655174 (Clockwise)
Preceding gene: 150003798
Following gene: 150003800
Centisome position: 32.0
GC content: 43.81
Gene sequence:
>2769_bases ATGAAAAAGGTTGTTAGAGCTGTGTCTCTTATGCTGCTGATGGCAGGTGTTTGTGGAAATGCATTTGCCGAGGAAAATGA AAACATTGTCCGGCAAGGCGCTATCCGCGGACGTGTGATAGACAATGGAAAACAAATTCTGCCGGGTGCTTCCATCTTTG TTGAAAATCTGAAAACCGGAGTAATCAGTGATGTGAACGGTTTTTATACGCTGCCCAATCTGAAACCCGGAACTTACACA GTTAAAGTAACCTACGTAGGTTATAGCCCCATTGAAATGAAAGTTACCGTCCCCGAAGGCAAGACTTTAGAAAAAGATAT AGTGATGAATGAAGGGGTGGAACTGCAGGAAGTGCAGGTAAAGGGAGCTTTTCAAGGACAGAAGAAAGCAATCAATACAC AAAAGAATAATCTGGGTATCACTAATGTTGTATCTGCCGACCAGGTAGGGAAATTTCCCGACTCAAACATAGGTGATGCA TTGAAACGTATCAGTGGCATCAATGTGCAATACGATCAAGGCGAGGCCCGTTTCGGACAGGTCCGCGGCACTAGTGCCGA TTTAAGCTCCGTCACCATTAACGGCAACCGTGTCCCATCTGCTGAAGGGGATACCCGTAACGTGCAGTTGGACTTGATTC CTGCCGATATGATTCAGACCATCGAAGTAAGCAAAGTCGTTACACCCGATATGGACGGCGATGCTATCGGTGGTTCCATC AATCTGGTAACCAAAAATTCTCCTTATAAACGCACTATCAATGCTACAGCGGGAAGTGGTTACAACTGGATCAGCGAGAA AGCCCAGTTGAACTTAGGTTTCACTTACGGCGATCGTTTCTTCAATGACAGACTGGGTATGCTGCTCTCCGCTTCTTATC AGAATGCTCCTTCCGGTTCTTATGATACTGAATTCATGTGGGAACAAAATGAAGATGGCAAAGTATATGTCAGCGATTAT CAGATGCGCCAGTACTTTGTCACCCGTGAACGTCAAAGTTATTCGGCGGCTTTTGATTTTGATATCAATGAAAACCATAA ATTGACTTTCAAAGGGATCTTCAACAACCGTAACGATTGGGAAAACCGTTACCGTACCAATATCAAGGATTTGGATGAGA ACGGAAAAGGCACAGTCCGCATCCAGACCAAAGCAGGTACTCCTGATAATCGCAATGCCCGTCTGGAGCGTCAGCGTACC ATGGATTTCGCTTTGGGCGGAGAACACTTATGGGGGGCAATCGGTATGGATTGGAATGCCAGTTATGCAAAAGCTACGGA AGAACGCCCTAATGAACGTTATCTTGACTTCCAACTGAAAAAGCAGGAATTTGATATGGACTTGAGTGATGAACGCCAGC CGTTGGCAACACCTGGAACAGGTGCTACTTTGACACTGAGTGATAAGTTCAGCTTGAAGGAACTGACGGAACAACAGGAG GACATCAAAGAAGAAGATATGAAATTCTCGGCCAATTTCAAGGCCAGTTTAAATAATGGAGCCAAACTGAAGTTCGGTGC GAAGGTAGTACGTAAAACAAAAGAGAAAGAAATAGACTTCTACGAATATACTCCGAAAGACGAGGATGCCTTCATGACCA ACAGCCTGAAAAATACGGTAGACCAGAGTACGGATAAGTTTATGCCGAGCGACAAATATCAGGTAGGAACATTTGCCAGT AAAGAATATGTGGGTGGATTGAATTTAAATGATGCTTCCCAGTTCGATAAAGAACAGGTACAAGCCGAATTGGCTGAGAA CTTTGAGGCTCGTGAAACTGTAAGTTCCGGGTATGTGCGGTTTGATCATAAATTCGCTTCCGATATAAACCTGATGGCGG GACTCCGTATGGAACATACTTCCCTTCGTTATACCGGCCGTAACTATGATGATGAGACAGATAAGACCACCAAGACCGGC CGCATGACCAACAGTTATGTGAATTTCCTTCCTTCTATTTTGGTGAAATGGGATGTAAATGATGATTTCAAGATACGCGG TTCTTACACGCAGACCTTGAGCCGGCCCAAATATTCAGCTTTGGTTCCCAGTGTGAATATCAACCGTGGTGATAATGAAA TAAAGATTGGTAATTCTGACTTGAAACCGACTATTTCTTATAACTTTGATTTGAGTGCCGATTATTATTTCAAGAGTGTA GGTTTAGTGAGCGCAGGTTTTTTCTATAAGAAAATAGACGATTTCATCGTAGATCAGGTACTGACCAACTATGAATACCA AGGAACAGAATATACCCGTTTCACTCAGCCCAAGAATGCAGGAAATGCTAATCTGTGGGGATTGGAATTTTCTTATCAGC GTGATTTCGGCTTCATTGCTCCGGCCTTGAAGTATGTGGGTTTCTATGGAACCTATACTTATACTCACTCACGCGTGGAG GACTTTAACTTCGAAGGACGTGAGAACGAGAGCGGGTTGAGTTTGCCGGGGTCTCCCGAGCATACGGCGAATGCCTCTCT TTACTTTGAAAAAGGAGGCTTGAATGTGCGCCTGAGCTATAACTTTGCATCTGATTTTATCGATGAAATGGGCCCAAGTA CATTTTATGACAGATATTATGATGCTGTGAACTATATGGATGTGAACGCTAGTTATACCTTTGGCAAGAAGGTGAAAATG ACCTTTTATGCTGAGGCGAACAATCTGCTGAACCAGCCGCTCCGTTATTACCAGGGAACGAAGGATCGTACTATGCAGGC AGAATATTATGGCGTGAGAATGAATGCAGGTTTAAAAATAAGTTTCTAA
Upstream 100 bases:
>100_bases GAATGAAACTCCTTTGTCACGAAACCTTTAATAGAGTGTAACTCTCAAGAAACCTGACCCATCTACTTTTGCGGCAGATT TATAACGCATAAAAAAGTAT
Downstream 100 bases:
>100_bases AAATAAGTATATGAAAACGTTGATGATGATTAGAAGAATGAAAGAAGTATTGACATGGGTATGGATTGCCGTCATTGGTA CGGCTATCTGCCTGAATGTG
Product: putative TonB-dependent outer membrane receptor protein
Products: NA
Alternate protein names: NB-Dependent Receptor Subfamily; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Receptor; NB-Dependent Outer Membrane Receptor Protein; Nb-Dependent Outer Membrane Receptor Protein; Outer Membrane Protein; NB-Dependent Receptor Protein; NB-Dependent Receptor Domain Protein; NB Dependent Receptor; NB Dependent Receptor Protein; Outer Membrane Insertion C-Terminal Signal; NB-Dependent Receptor Subfamily Protein; NB Dependent/Ligand-Gated Channel; NB-Dependent Outer Membrane Fe Receptor Protein; Exported nB-Dependent Receptor; NB-Dependent Receptor-Like Protein; Peptidase; Nucleoside Diphosphate Kinase; Outer Membrane Receptor Family Protein; NB Dependent Receptor For Iron Chelates; Outer Membrane Receptor Proteins Mostly Fe Transport-Like; NB-Dependent Receptor HmuR; Outer Membrane Receptor Protein; NB-Dependent Siderophore Receptor; NB-Dependent Receptor Plug Domain Protein; NB-Dependent Outer Membrane Ferripyoverdine Receptor; 1-(5-Phosphoribosyl)-5-; NB Dependent Receptor-Related Protein; Argininosuccinate Synthase; Ferrienterochelin/Colicin Outer Membrane Receptor; Nb-Dependent Receptor Plug
Number of amino acids: Translated: 922; Mature: 922
Protein sequence:
>922_residues MKKVVRAVSLMLLMAGVCGNAFAEENENIVRQGAIRGRVIDNGKQILPGASIFVENLKTGVISDVNGFYTLPNLKPGTYT VKVTYVGYSPIEMKVTVPEGKTLEKDIVMNEGVELQEVQVKGAFQGQKKAINTQKNNLGITNVVSADQVGKFPDSNIGDA LKRISGINVQYDQGEARFGQVRGTSADLSSVTINGNRVPSAEGDTRNVQLDLIPADMIQTIEVSKVVTPDMDGDAIGGSI NLVTKNSPYKRTINATAGSGYNWISEKAQLNLGFTYGDRFFNDRLGMLLSASYQNAPSGSYDTEFMWEQNEDGKVYVSDY QMRQYFVTRERQSYSAAFDFDINENHKLTFKGIFNNRNDWENRYRTNIKDLDENGKGTVRIQTKAGTPDNRNARLERQRT MDFALGGEHLWGAIGMDWNASYAKATEERPNERYLDFQLKKQEFDMDLSDERQPLATPGTGATLTLSDKFSLKELTEQQE DIKEEDMKFSANFKASLNNGAKLKFGAKVVRKTKEKEIDFYEYTPKDEDAFMTNSLKNTVDQSTDKFMPSDKYQVGTFAS KEYVGGLNLNDASQFDKEQVQAELAENFEARETVSSGYVRFDHKFASDINLMAGLRMEHTSLRYTGRNYDDETDKTTKTG RMTNSYVNFLPSILVKWDVNDDFKIRGSYTQTLSRPKYSALVPSVNINRGDNEIKIGNSDLKPTISYNFDLSADYYFKSV GLVSAGFFYKKIDDFIVDQVLTNYEYQGTEYTRFTQPKNAGNANLWGLEFSYQRDFGFIAPALKYVGFYGTYTYTHSRVE DFNFEGRENESGLSLPGSPEHTANASLYFEKGGLNVRLSYNFASDFIDEMGPSTFYDRYYDAVNYMDVNASYTFGKKVKM TFYAEANNLLNQPLRYYQGTKDRTMQAEYYGVRMNAGLKISF
Sequences:
>Translated_922_residues MKKVVRAVSLMLLMAGVCGNAFAEENENIVRQGAIRGRVIDNGKQILPGASIFVENLKTGVISDVNGFYTLPNLKPGTYT VKVTYVGYSPIEMKVTVPEGKTLEKDIVMNEGVELQEVQVKGAFQGQKKAINTQKNNLGITNVVSADQVGKFPDSNIGDA LKRISGINVQYDQGEARFGQVRGTSADLSSVTINGNRVPSAEGDTRNVQLDLIPADMIQTIEVSKVVTPDMDGDAIGGSI NLVTKNSPYKRTINATAGSGYNWISEKAQLNLGFTYGDRFFNDRLGMLLSASYQNAPSGSYDTEFMWEQNEDGKVYVSDY QMRQYFVTRERQSYSAAFDFDINENHKLTFKGIFNNRNDWENRYRTNIKDLDENGKGTVRIQTKAGTPDNRNARLERQRT MDFALGGEHLWGAIGMDWNASYAKATEERPNERYLDFQLKKQEFDMDLSDERQPLATPGTGATLTLSDKFSLKELTEQQE DIKEEDMKFSANFKASLNNGAKLKFGAKVVRKTKEKEIDFYEYTPKDEDAFMTNSLKNTVDQSTDKFMPSDKYQVGTFAS KEYVGGLNLNDASQFDKEQVQAELAENFEARETVSSGYVRFDHKFASDINLMAGLRMEHTSLRYTGRNYDDETDKTTKTG RMTNSYVNFLPSILVKWDVNDDFKIRGSYTQTLSRPKYSALVPSVNINRGDNEIKIGNSDLKPTISYNFDLSADYYFKSV GLVSAGFFYKKIDDFIVDQVLTNYEYQGTEYTRFTQPKNAGNANLWGLEFSYQRDFGFIAPALKYVGFYGTYTYTHSRVE DFNFEGRENESGLSLPGSPEHTANASLYFEKGGLNVRLSYNFASDFIDEMGPSTFYDRYYDAVNYMDVNASYTFGKKVKM TFYAEANNLLNQPLRYYQGTKDRTMQAEYYGVRMNAGLKISF >Mature_922_residues MKKVVRAVSLMLLMAGVCGNAFAEENENIVRQGAIRGRVIDNGKQILPGASIFVENLKTGVISDVNGFYTLPNLKPGTYT VKVTYVGYSPIEMKVTVPEGKTLEKDIVMNEGVELQEVQVKGAFQGQKKAINTQKNNLGITNVVSADQVGKFPDSNIGDA LKRISGINVQYDQGEARFGQVRGTSADLSSVTINGNRVPSAEGDTRNVQLDLIPADMIQTIEVSKVVTPDMDGDAIGGSI NLVTKNSPYKRTINATAGSGYNWISEKAQLNLGFTYGDRFFNDRLGMLLSASYQNAPSGSYDTEFMWEQNEDGKVYVSDY QMRQYFVTRERQSYSAAFDFDINENHKLTFKGIFNNRNDWENRYRTNIKDLDENGKGTVRIQTKAGTPDNRNARLERQRT MDFALGGEHLWGAIGMDWNASYAKATEERPNERYLDFQLKKQEFDMDLSDERQPLATPGTGATLTLSDKFSLKELTEQQE DIKEEDMKFSANFKASLNNGAKLKFGAKVVRKTKEKEIDFYEYTPKDEDAFMTNSLKNTVDQSTDKFMPSDKYQVGTFAS KEYVGGLNLNDASQFDKEQVQAELAENFEARETVSSGYVRFDHKFASDINLMAGLRMEHTSLRYTGRNYDDETDKTTKTG RMTNSYVNFLPSILVKWDVNDDFKIRGSYTQTLSRPKYSALVPSVNINRGDNEIKIGNSDLKPTISYNFDLSADYYFKSV GLVSAGFFYKKIDDFIVDQVLTNYEYQGTEYTRFTQPKNAGNANLWGLEFSYQRDFGFIAPALKYVGFYGTYTYTHSRVE DFNFEGRENESGLSLPGSPEHTANASLYFEKGGLNVRLSYNFASDFIDEMGPSTFYDRYYDAVNYMDVNASYTFGKKVKM TFYAEANNLLNQPLRYYQGTKDRTMQAEYYGVRMNAGLKISF
Specific function: Not Yet Known. Postulated To Participate In Iron Transport. Outer Membrane Receptor For Colicins Ia And Ib. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104176; Mature: 104176
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVVRAVSLMLLMAGVCGNAFAEENENIVRQGAIRGRVIDNGKQILPGASIFVENLKTG CHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCCCCCEEECCCCEECCCHHHHHHHHHCC VISDVNGFYTLPNLKPGTYTVKVTYVGYSPIEMKVTVPEGKTLEKDIVMNEGVELQEVQV CEECCCCEEECCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCHHHHHCCCCEEEEEEE KGAFQGQKKAINTQKNNLGITNVVSADQVGKFPDSNIGDALKRISGINVQYDQGEARFGQ ECCCCCCHHHCCCCCCCCCEEEEECHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCEECE VRGTSADLSSVTINGNRVPSAEGDTRNVQLDLIPADMIQTIEVSKVVTPDMDGDAIGGSI ECCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECHHHHHHEEEEEEECCCCCCCCCCCEE NLVTKNSPYKRTINATAGSGYNWISEKAQLNLGFTYGDRFFNDRLGMLLSASYQNAPSGS EEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHEEEECCCCCCCCC YDTEFMWEQNEDGKVYVSDYQMRQYFVTRERQSYSAAFDFDINENHKLTFKGIFNNRNDW CCCEEEEEECCCCEEEEECHHEEHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCCCCH ENRYRTNIKDLDENGKGTVRIQTKAGTPDNRNARLERQRTMDFALGGEHLWGAIGMDWNA HHHHHCCCHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHEECCCCCEEEEECCCCCC SYAKATEERPNERYLDFQLKKQEFDMDLSDERQPLATPGTGATLTLSDKFSLKELTEQQE HHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH DIKEEDMKFSANFKASLNNGAKLKFGAKVVRKTKEKEIDFYEYTPKDEDAFMTNSLKNTV HHHHHCCEEECCEEEECCCCCEEEHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH DQSTDKFMPSDKYQVGTFASKEYVGGLNLNDASQFDKEQVQAELAENFEARETVSSGYVR HHHHHHCCCCCCEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCEEE FDHKFASDINLMAGLRMEHTSLRYTGRNYDDETDKTTKTGRMTNSYVNFLPSILVKWDVN ECCHHHCCCHHHHCCEEECCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCC DDFKIRGSYTQTLSRPKYSALVPSVNINRGDNEIKIGNSDLKPTISYNFDLSADYYFKSV CCEEEECCHHHHHCCCCHHHCCCCEECCCCCCEEEECCCCCCCEEEEEECCCCCHHEECC GLVSAGFFYKKIDDFIVDQVLTNYEYQGTEYTRFTQPKNAGNANLWGLEFSYQRDFGFIA CHHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCHHH PALKYVGFYGTYTYTHSRVEDFNFEGRENESGLSLPGSPEHTANASLYFEKGGLNVRLSY HHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEE NFASDFIDEMGPSTFYDRYYDAVNYMDVNASYTFGKKVKMTFYAEANNLLNQPLRYYQGT CCHHHHHHHCCCCHHHHHHHHHHEEEECCCCEEECCEEEEEEEECHHHHHHHHHHHHCCC KDRTMQAEYYGVRMNAGLKISF CCCEEEEEEEEEEECCCEEEEC >Mature Secondary Structure MKKVVRAVSLMLLMAGVCGNAFAEENENIVRQGAIRGRVIDNGKQILPGASIFVENLKTG CHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCCCCCEEECCCCEECCCHHHHHHHHHCC VISDVNGFYTLPNLKPGTYTVKVTYVGYSPIEMKVTVPEGKTLEKDIVMNEGVELQEVQV CEECCCCEEECCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCHHHHHCCCCEEEEEEE KGAFQGQKKAINTQKNNLGITNVVSADQVGKFPDSNIGDALKRISGINVQYDQGEARFGQ ECCCCCCHHHCCCCCCCCCEEEEECHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCEECE VRGTSADLSSVTINGNRVPSAEGDTRNVQLDLIPADMIQTIEVSKVVTPDMDGDAIGGSI ECCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECHHHHHHEEEEEEECCCCCCCCCCCEE NLVTKNSPYKRTINATAGSGYNWISEKAQLNLGFTYGDRFFNDRLGMLLSASYQNAPSGS EEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHEEEECCCCCCCCC YDTEFMWEQNEDGKVYVSDYQMRQYFVTRERQSYSAAFDFDINENHKLTFKGIFNNRNDW CCCEEEEEECCCCEEEEECHHEEHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCCCCH ENRYRTNIKDLDENGKGTVRIQTKAGTPDNRNARLERQRTMDFALGGEHLWGAIGMDWNA HHHHHCCCHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHEECCCCCEEEEECCCCCC SYAKATEERPNERYLDFQLKKQEFDMDLSDERQPLATPGTGATLTLSDKFSLKELTEQQE HHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH DIKEEDMKFSANFKASLNNGAKLKFGAKVVRKTKEKEIDFYEYTPKDEDAFMTNSLKNTV HHHHHCCEEECCEEEECCCCCEEEHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH DQSTDKFMPSDKYQVGTFASKEYVGGLNLNDASQFDKEQVQAELAENFEARETVSSGYVR HHHHHHCCCCCCEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCEEE FDHKFASDINLMAGLRMEHTSLRYTGRNYDDETDKTTKTGRMTNSYVNFLPSILVKWDVN ECCHHHCCCHHHHCCEEECCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCC DDFKIRGSYTQTLSRPKYSALVPSVNINRGDNEIKIGNSDLKPTISYNFDLSADYYFKSV CCEEEECCHHHHHCCCCHHHCCCCEECCCCCCEEEECCCCCCCEEEEEECCCCCHHEECC GLVSAGFFYKKIDDFIVDQVLTNYEYQGTEYTRFTQPKNAGNANLWGLEFSYQRDFGFIA CHHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCHHH PALKYVGFYGTYTYTHSRVEDFNFEGRENESGLSLPGSPEHTANASLYFEKGGLNVRLSY HHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEE NFASDFIDEMGPSTFYDRYYDAVNYMDVNASYTFGKKVKMTFYAEANNLLNQPLRYYQGT CCHHHHHHHCCCCHHHHHHHHHHEEEECCCCEEECCEEEEEEEECHHHHHHHHHHHHCCC KDRTMQAEYYGVRMNAGLKISF CCCEEEEEEEEEEECCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA