Click here to switch to the map view.

The map label for this gene is rnhA [H]

Identifier: 150003649

GI number: 150003649

Start: 1435449

End: 1436075

Strand: Reverse

Name: rnhA [H]

Synonym: BVU_1080

Alternate gene names: 150003649

Gene position: 1436075-1435449 (Counterclockwise)

Preceding gene: 150003650

Following gene: 150003648

Centisome position: 27.81

GC content: 44.02

Gene sequence:

>627_bases
ATGGCAAAGAAACAGAAATATTATGTAGTATGGAAAGGTGTCAATCCGGGAGTTTATGACTCCTGGACTGACTGCCAGCT
ACAGATAAAAGGTTATGATGGCGCACAATACAAGTCATTCGAGACCAAAGAGGAGGCGGAACACGCCTTGGCTTCTTCCG
CTTTTCATTATATAGGCAAGAATGCTGTTAAAAAAGAAGATACTCCTAAACAACTTCCCGAGAACTTTGATATGAACTGC
CTGGCTGTGGATGCCGCTTGCAGTGGAAATCCCGGACCGATGGAATATCGGGGCGTTTATTTGCTTACGGGACAGGAGGT
TTTTCATTTCGGTCCTGTTTATGGAACGAATAATATTGGAGAGTTTCTTGCCATTGTCCATGCCTTGGCATTGATGAAGC
AGAAGAATATCAGTATGCCTGTTTACTCGGACAGCCGTAATGCGTTGAGCTGGGTGAAACAGAAGAAATGTAAAACTAAA
CTAGAGCGGACTCCTCAGACGGAGAAACTTTTTCAAATGATAGAACGGGCCGAAATTTGGCTGAAAGAAAATAAATATAC
CACACCTTTATTGAAGTGGGAAACCGACCGATGGGGAGAGGTCCCGGCTGATTTCGGACGGAAATAA

Upstream 100 bases:

>100_bases
AGCGTTGAAAGTCTTCCGTCTGGCATTGAGTGCCAATGTGGGCAAGATTGTGAAGACAGCAATGGGCTTGCTGGGTATTG
AAGTGCCTGAACGTATGTAA

Downstream 100 bases:

>100_bases
TAAAGAACTGAAGATATGAAAAAGAGGATTGCTTATATCAGCTTGTACTTTTTTACGGTCTTACTGATATTTATTCTACA
GAAACCATTATTCATGCTCT

Product: putative ribonuclease H1

Products: NA

Alternate protein names: RNase H [H]

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MAKKQKYYVVWKGVNPGVYDSWTDCQLQIKGYDGAQYKSFETKEEAEHALASSAFHYIGKNAVKKEDTPKQLPENFDMNC
LAVDAACSGNPGPMEYRGVYLLTGQEVFHFGPVYGTNNIGEFLAIVHALALMKQKNISMPVYSDSRNALSWVKQKKCKTK
LERTPQTEKLFQMIERAEIWLKENKYTTPLLKWETDRWGEVPADFGRK

Sequences:

>Translated_208_residues
MAKKQKYYVVWKGVNPGVYDSWTDCQLQIKGYDGAQYKSFETKEEAEHALASSAFHYIGKNAVKKEDTPKQLPENFDMNC
LAVDAACSGNPGPMEYRGVYLLTGQEVFHFGPVYGTNNIGEFLAIVHALALMKQKNISMPVYSDSRNALSWVKQKKCKTK
LERTPQTEKLFQMIERAEIWLKENKYTTPLLKWETDRWGEVPADFGRK
>Mature_207_residues
AKKQKYYVVWKGVNPGVYDSWTDCQLQIKGYDGAQYKSFETKEEAEHALASSAFHYIGKNAVKKEDTPKQLPENFDMNCL
AVDAACSGNPGPMEYRGVYLLTGQEVFHFGPVYGTNNIGEFLAIVHALALMKQKNISMPVYSDSRNALSWVKQKKCKTKL
ERTPQTEKLFQMIERAEIWLKENKYTTPLLKWETDRWGEVPADFGRK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG3341

COG function: function code R; Predicted double-stranded RNA/RNA-DNA hybrid binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009027
- InterPro:   IPR017290
- InterPro:   IPR011320
- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF01693 Cauli_VI; PF00075 RnaseH [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 23846; Mature: 23715

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKQKYYVVWKGVNPGVYDSWTDCQLQIKGYDGAQYKSFETKEEAEHALASSAFHYIGK
CCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
NAVKKEDTPKQLPENFDMNCLAVDAACSGNPGPMEYRGVYLLTGQEVFHFGPVYGTNNIG
HHCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCEEECCEEEEECCCEEEECCCCCCCCHH
EFLAIVHALALMKQKNISMPVYSDSRNALSWVKQKKCKTKLERTPQTEKLFQMIERAEIW
HHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHE
LKENKYTTPLLKWETDRWGEVPADFGRK
ECCCCCCCCEEEECCCCCCCCCHHCCCC
>Mature Secondary Structure 
AKKQKYYVVWKGVNPGVYDSWTDCQLQIKGYDGAQYKSFETKEEAEHALASSAFHYIGK
CCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
NAVKKEDTPKQLPENFDMNCLAVDAACSGNPGPMEYRGVYLLTGQEVFHFGPVYGTNNIG
HHCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCEEECCEEEEECCCEEEECCCCCCCCHH
EFLAIVHALALMKQKNISMPVYSDSRNALSWVKQKKCKTKLERTPQTEKLFQMIERAEIW
HHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHE
LKENKYTTPLLKWETDRWGEVPADFGRK
ECCCCCCCCEEEECCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]