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The map label for this gene is rpoE [C]

Identifier: 150003622

GI number: 150003622

Start: 1400744

End: 1401289

Strand: Reverse

Name: rpoE [C]

Synonym: BVU_1053

Alternate gene names: 150003622

Gene position: 1401289-1400744 (Counterclockwise)

Preceding gene: 150003629

Following gene: 150003620

Centisome position: 27.14

GC content: 39.38

Gene sequence:

>546_bases
ATGAACCTTAATGATAACCGCTTAATTATTAAAACCTTGAAGTCGGGAGATCAAAAAGTATTTTCCCTGGTTTATGCTTC
TTATTACAAGCCGCTATGTTTGTTTTGTTCCTCGTATGTTTCTCTTGAAGAGGCTGAAGAGATAGTGCAGGATTTGATGA
TGTATGTGTGGGAAAAACGTGAGTTGCTGGTAGAGGACTTGTCGCTGAAATCTTTCTTATTTACCAGTGTCAGGAACAGG
GCTTTGAATTCAATCACCCGTTCCCATATTACCCGTCAGGTATATGAAGAATATCAGAGCCAACAGTTGAAATCTCTGCC
GGCATTGGATTCTTGTTATGGCACGGAGTTGTTTAATACCTATATGGAAGCCCTTCATTCTCTTCCTAAAGAACTGCAAA
GAGTATATGTTATGAGTCGGTATAAACAACTGACCCATAAAGAAATTGCTGACAAGCTGGAGGTGTCGGTGCAGACTGTC
AATTATCGGATAGGCAAAGCTCTTCAGTTTTTTCGTATTAGATTGAAAGATTTTTGCCTAGAATAG

Upstream 100 bases:

>100_bases
ACTAAACAAAAACTTATATTTTTTGTATTTTATCTCATTCTTGTTTTCTTATTTTGAAATAAATACTTATGTTTGTGTAA
CCTTAAATTAAAAATGACCT

Downstream 100 bases:

>100_bases
TCGCTTCAATCACCCGAGGGAAATATTCGTATTCCAACTGGTGCACCCGTATTGCCAATGTATCTGGCGTGTCAGTGGGC
AATACCGGACAGGTGGCTTG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-H Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Type RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF-Type RNA Polymerase; ECF Sigma Factor; Sigma Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNLNDNRLIIKTLKSGDQKVFSLVYASYYKPLCLFCSSYVSLEEAEEIVQDLMMYVWEKRELLVEDLSLKSFLFTSVRNR
ALNSITRSHITRQVYEEYQSQQLKSLPALDSCYGTELFNTYMEALHSLPKELQRVYVMSRYKQLTHKEIADKLEVSVQTV
NYRIGKALQFFRIRLKDFCLE

Sequences:

>Translated_181_residues
MNLNDNRLIIKTLKSGDQKVFSLVYASYYKPLCLFCSSYVSLEEAEEIVQDLMMYVWEKRELLVEDLSLKSFLFTSVRNR
ALNSITRSHITRQVYEEYQSQQLKSLPALDSCYGTELFNTYMEALHSLPKELQRVYVMSRYKQLTHKEIADKLEVSVQTV
NYRIGKALQFFRIRLKDFCLE
>Mature_181_residues
MNLNDNRLIIKTLKSGDQKVFSLVYASYYKPLCLFCSSYVSLEEAEEIVQDLMMYVWEKRELLVEDLSLKSFLFTSVRNR
ALNSITRSHITRQVYEEYQSQQLKSLPALDSCYGTELFNTYMEALHSLPKELQRVYVMSRYKQLTHKEIADKLEVSVQTV
NYRIGKALQFFRIRLKDFCLE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21412; Mature: 21412

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNDNRLIIKTLKSGDQKVFSLVYASYYKPLCLFCSSYVSLEEAEEIVQDLMMYVWEKR
CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLVEDLSLKSFLFTSVRNRALNSITRSHITRQVYEEYQSQQLKSLPALDSCYGTELFNT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YMEALHSLPKELQRVYVMSRYKQLTHKEIADKLEVSVQTVNYRIGKALQFFRIRLKDFCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
E
C
>Mature Secondary Structure
MNLNDNRLIIKTLKSGDQKVFSLVYASYYKPLCLFCSSYVSLEEAEEIVQDLMMYVWEKR
CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLVEDLSLKSFLFTSVRNRALNSITRSHITRQVYEEYQSQQLKSLPALDSCYGTELFNT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YMEALHSLPKELQRVYVMSRYKQLTHKEIADKLEVSVQTVNYRIGKALQFFRIRLKDFCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA