Click here to switch to the map view.

The map label for this gene is pdaA [H]

Identifier: 150003594

GI number: 150003594

Start: 1357349

End: 1358041

Strand: Direct

Name: pdaA [H]

Synonym: BVU_1023

Alternate gene names: 150003594

Gene position: 1357349-1358041 (Clockwise)

Preceding gene: 150003593

Following gene: 150003595

Centisome position: 26.29

GC content: 46.03

Gene sequence:

>693_bases
ATGCACATCCTAGTTTCTGTAGTCATCATAGTAAGCGTCATGGCCTATTTCTTTTACGCTTCTTACAGCATCCGTGCCTG
TATTTACATGTGTGTCTTCTGTTGCAAGAAAACCGAAGAGAAAATCATAGCCATCACTTTTGATGACGGGCCCGATCCGA
TACAGACTCCCAAAGTGCTGAAAGTGTTAAGAGAAAAACACATACCGGCCTGCTTTTTTTGCATCGGAAACAAGATAAAA
GGCAATGAAGAGCTGCTCCGGCAAATCATCAAAGAAGGACATCGTATCGGGAATCATTCCTTCTCCCATTCCGGCTATTT
TCCTCTCTATACCTTCAAACGGATGTGCCATGATTTAATTACCTGCCAGCAAGAATTGGAAAAAGTGACCGGCCAACCGG
TCCTATGGTTCCGGCCGCCTTTCGGAGTGACTAATCCTACCCTGGCTAAAGCAGTGCGCAGGCTGGGATACATCCCCATT
GGTTGGAACATCCGCACACTGGACACTCAGCAACCCACTCCTGAAAAAATTATCAAACGCATCAAGAAACGGCTCGTTCC
GGGCTCCATCCTTCTGCTACATGACCGGATGCCCGATAGTGACAGGCTGCTGGTACAAGTTCTGGACTTTATAGAAAAAG
AGGGGTATACGGTAGTAACATTAGACAGGCTGATAAAGGACATGACAAAATAA

Upstream 100 bases:

>100_bases
CCGAAAAAAAGTTCAGAATACTGACAGATAATGACAAACAATTAGAATAATCTCTACAAGATCATTTATTAAAGTATCAC
TCAATCATCTTAATCAAGCA

Downstream 100 bases:

>100_bases
ATTTCTTCTATATTTTCAACAGCAACATCACCAAGTTCCAAAAACGAGACCCAGTTCACACCTCATGATCAAACTGATAA
AAAGATAACTTCGTCTTACG

Product: putative xylanase/chitin deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MHILVSVVIIVSVMAYFFYASYSIRACIYMCVFCCKKTEEKIIAITFDDGPDPIQTPKVLKVLREKHIPACFFCIGNKIK
GNEELLRQIIKEGHRIGNHSFSHSGYFPLYTFKRMCHDLITCQQELEKVTGQPVLWFRPPFGVTNPTLAKAVRRLGYIPI
GWNIRTLDTQQPTPEKIIKRIKKRLVPGSILLLHDRMPDSDRLLVQVLDFIEKEGYTVVTLDRLIKDMTK

Sequences:

>Translated_230_residues
MHILVSVVIIVSVMAYFFYASYSIRACIYMCVFCCKKTEEKIIAITFDDGPDPIQTPKVLKVLREKHIPACFFCIGNKIK
GNEELLRQIIKEGHRIGNHSFSHSGYFPLYTFKRMCHDLITCQQELEKVTGQPVLWFRPPFGVTNPTLAKAVRRLGYIPI
GWNIRTLDTQQPTPEKIIKRIKKRLVPGSILLLHDRMPDSDRLLVQVLDFIEKEGYTVVTLDRLIKDMTK
>Mature_230_residues
MHILVSVVIIVSVMAYFFYASYSIRACIYMCVFCCKKTEEKIIAITFDDGPDPIQTPKVLKVLREKHIPACFFCIGNKIK
GNEELLRQIIKEGHRIGNHSFSHSGYFPLYTFKRMCHDLITCQQELEKVTGQPVLWFRPPFGVTNPTLAKAVRRLGYIPI
GWNIRTLDTQQPTPEKIIKRIKKRLVPGSILLLHDRMPDSDRLLVQVLDFIEKEGYTVVTLDRLIKDMTK

Specific function: Required for production of muramic delta-lactam residues in the spore cortex and for germination [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014235 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 26570; Mature: 26570

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHILVSVVIIVSVMAYFFYASYSIRACIYMCVFCCKKTEEKIIAITFDDGPDPIQTPKVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHH
KVLREKHIPACFFCIGNKIKGNEELLRQIIKEGHRIGNHSFSHSGYFPLYTFKRMCHDLI
HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
TCQQELEKVTGQPVLWFRPPFGVTNPTLAKAVRRLGYIPIGWNIRTLDTQQPTPEKIIKR
HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHH
IKKRLVPGSILLLHDRMPDSDRLLVQVLDFIEKEGYTVVTLDRLIKDMTK
HHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCC
>Mature Secondary Structure
MHILVSVVIIVSVMAYFFYASYSIRACIYMCVFCCKKTEEKIIAITFDDGPDPIQTPKVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHH
KVLREKHIPACFFCIGNKIKGNEELLRQIIKEGHRIGNHSFSHSGYFPLYTFKRMCHDLI
HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
TCQQELEKVTGQPVLWFRPPFGVTNPTLAKAVRRLGYIPIGWNIRTLDTQQPTPEKIIKR
HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHH
IKKRLVPGSILLLHDRMPDSDRLLVQVLDFIEKEGYTVVTLDRLIKDMTK
HHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377; 12374835 [H]