Click here to switch to the map view.

The map label for this gene is ydgJ [C]

Identifier: 150003523

GI number: 150003523

Start: 1255301

End: 1256947

Strand: Direct

Name: ydgJ [C]

Synonym: BVU_0950

Alternate gene names: 150003523

Gene position: 1255301-1256947 (Clockwise)

Preceding gene: 150003522

Following gene: 150003527

Centisome position: 24.31

GC content: 50.27

Gene sequence:

>1647_bases
ATGAAACTGAAAAAGCTTTTGTTATCTGTCTTGATGTTGCTGTCTATTAGCGGCCTTCAGGCGCAATCACTGTCCCCCTC
TACCCAAATCCATTGGGATAAGGGAACCCTTGTAATAGAAACCCCTGAGCGGCCGACCGACCAACAGCATGTGCTCGGTC
TTACCGCTCCGAAGATGGAAACCGTGCGTGTGGCTTTTGTGGGCTTGGGTATGCGCGGCCCTTGGGCGGTGTGGCGCTTC
TGCAACATCCCAGGTGTAGAAGTCGTGGCACTATGCGACTACGAAGAAGACCGTGCAGAGGCATCCCAGAAATACCTACG
TGATGCCAGCTTGATTCCGGCCGATATCTATTCAGGTGAGAAAGGGTATGAAACCCTTTGTCAACGTCCAGACATCGATC
TGGTGTATATTGCCACTGACTGGAATCACCACTTCCCTGTGGCTAAGTATGCCATGAAACATGGCAAGCACGTGGCTATA
GAAGTGCCATCGGCCATGAACCTAGAGCAATGCTGGAGCTTGATTGATCTCTCTGAACAGACACGCCTGCACTGCTTCAT
CCTAGAGAACTGCTGCTATGACTATTATGAGATGAATGCCTTGGCCATGGCTAAGGATGGAGTATTCGGCGAAATCATTC
GGGCTGAAGGCGCTTACATCCACGAACTGTCGGCTTTTTGGAAGTCGTACTGGCAAGATCCTAACGACAACGATACCGAC
AACTTGCATTGGCGCATGAAGTATAATATGGAGAACCGCGGTGATGTGTATGCCACCCATGGTCTGGGTCCAGTGGCTCA
ATGTATGGACATTCACCGCGGAGACCGCTTCACTACCTTGGTAGCTATGGATACCGAAAGTTTTGTGGGTAAGCAATATG
TCGAGAACCTCACCGGCAAGGAACCAAAGGAATTCCGCAACGGTGACCACACTACTACGCTGATGCGCACAGCTCGTGGC
AAGGTAGTGGAAATTCAACACAACGTCATGACACCGCAGCCATACAACCGCCTGTTTAAGCTGACCGGAACTAAAGGCTA
CGCCACCAAGTACCCCACACCCGAATATGCCTTGTCGGGCGATGTCATGAAAGATACTGCGCCCAACATGGACGATATCA
ATGCCCACAGTTTTCTGAATGACGCTCAGAAGGAGGCCCTTGAAAAGAAATATTATCACCCTATCCTCACCAAGTTTGGC
GAAAAGGGGCGTGCCATGGGGCATGGTGGCATGGATTACATCATGGATGCTCGCCTGGTGTACTGCTTGCAAAACGGTTT
GCCGCTTGATATGGATGTCTATGATCTAGCCGAATGGTGCTGTCTCTCGGAATTGGGCGCTCTGTCGATGGATAACAACT
GTGCAGCTGTGACTTTCCCCGATTTTACCCGCGGTCATTGGGATGAAATGAAGGGGTATAAGCACGCCTATGCTTCGGCA
GAAGAAGAAGAAGCTACCGAAGCCAAGGCCGAAGCATATACCATCGCCCAGAAAGAGGTAGCTGCTGCTGCCAATCTCTG
GACACTCTATGATAACGTAAAAAATGCAGCCGATGAGAAAGCCCAGGACAAAGCTCTGAAAATCTACCAACGCGCCAAAG
CCAAAGCTCATCAGCAGCTGGCTAAAAAGCTGAAAGTAAAAAAGTAA

Upstream 100 bases:

>100_bases
CTGTCGCTTCTGAAAAGAGGCTCAGGCGGCAGGGAGGTCAAACGAATCAATCACAGAGCCTCGCCCGCTCAACCGTTTAT
TTGGTAAAAAAAATAGTAGT

Downstream 100 bases:

>100_bases
GTCTCGCAGAAGGATTTAAGAAACTGAATATTTTTTTTCTGAAGCGGATTTAAAACAGTTCCTAAGTCAAAATATGAGAA
AATAGGGGCACAGGATATTA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MKLKKLLLSVLMLLSISGLQAQSLSPSTQIHWDKGTLVIETPERPTDQQHVLGLTAPKMETVRVAFVGLGMRGPWAVWRF
CNIPGVEVVALCDYEEDRAEASQKYLRDASLIPADIYSGEKGYETLCQRPDIDLVYIATDWNHHFPVAKYAMKHGKHVAI
EVPSAMNLEQCWSLIDLSEQTRLHCFILENCCYDYYEMNALAMAKDGVFGEIIRAEGAYIHELSAFWKSYWQDPNDNDTD
NLHWRMKYNMENRGDVYATHGLGPVAQCMDIHRGDRFTTLVAMDTESFVGKQYVENLTGKEPKEFRNGDHTTTLMRTARG
KVVEIQHNVMTPQPYNRLFKLTGTKGYATKYPTPEYALSGDVMKDTAPNMDDINAHSFLNDAQKEALEKKYYHPILTKFG
EKGRAMGHGGMDYIMDARLVYCLQNGLPLDMDVYDLAEWCCLSELGALSMDNNCAAVTFPDFTRGHWDEMKGYKHAYASA
EEEEATEAKAEAYTIAQKEVAAAANLWTLYDNVKNAADEKAQDKALKIYQRAKAKAHQQLAKKLKVKK

Sequences:

>Translated_548_residues
MKLKKLLLSVLMLLSISGLQAQSLSPSTQIHWDKGTLVIETPERPTDQQHVLGLTAPKMETVRVAFVGLGMRGPWAVWRF
CNIPGVEVVALCDYEEDRAEASQKYLRDASLIPADIYSGEKGYETLCQRPDIDLVYIATDWNHHFPVAKYAMKHGKHVAI
EVPSAMNLEQCWSLIDLSEQTRLHCFILENCCYDYYEMNALAMAKDGVFGEIIRAEGAYIHELSAFWKSYWQDPNDNDTD
NLHWRMKYNMENRGDVYATHGLGPVAQCMDIHRGDRFTTLVAMDTESFVGKQYVENLTGKEPKEFRNGDHTTTLMRTARG
KVVEIQHNVMTPQPYNRLFKLTGTKGYATKYPTPEYALSGDVMKDTAPNMDDINAHSFLNDAQKEALEKKYYHPILTKFG
EKGRAMGHGGMDYIMDARLVYCLQNGLPLDMDVYDLAEWCCLSELGALSMDNNCAAVTFPDFTRGHWDEMKGYKHAYASA
EEEEATEAKAEAYTIAQKEVAAAANLWTLYDNVKNAADEKAQDKALKIYQRAKAKAHQQLAKKLKVKK
>Mature_548_residues
MKLKKLLLSVLMLLSISGLQAQSLSPSTQIHWDKGTLVIETPERPTDQQHVLGLTAPKMETVRVAFVGLGMRGPWAVWRF
CNIPGVEVVALCDYEEDRAEASQKYLRDASLIPADIYSGEKGYETLCQRPDIDLVYIATDWNHHFPVAKYAMKHGKHVAI
EVPSAMNLEQCWSLIDLSEQTRLHCFILENCCYDYYEMNALAMAKDGVFGEIIRAEGAYIHELSAFWKSYWQDPNDNDTD
NLHWRMKYNMENRGDVYATHGLGPVAQCMDIHRGDRFTTLVAMDTESFVGKQYVENLTGKEPKEFRNGDHTTTLMRTARG
KVVEIQHNVMTPQPYNRLFKLTGTKGYATKYPTPEYALSGDVMKDTAPNMDDINAHSFLNDAQKEALEKKYYHPILTKFG
EKGRAMGHGGMDYIMDARLVYCLQNGLPLDMDVYDLAEWCCLSELGALSMDNNCAAVTFPDFTRGHWDEMKGYKHAYASA
EEEEATEAKAEAYTIAQKEVAAAANLWTLYDNVKNAADEKAQDKALKIYQRAKAKAHQQLAKKLKVKK

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): G1093_BACV8 (A6KYY1)

Other databases:

- EMBL:   CP000139
- RefSeq:   YP_001298267.1
- ProteinModelPortal:   A6KYY1
- SMR:   A6KYY1
- STRING:   A6KYY1
- GeneID:   5301917
- GenomeReviews:   CP000139_GR
- KEGG:   bvu:BVU_0950
- NMPDR:   fig|435590.6.peg.895
- eggNOG:   COG0673
- HOGENOM:   HBG611861
- ProtClustDB:   CLSK2520892
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF01408 GFO_IDH_MocA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 62114; Mature: 62114

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: BINDING 93-93 BINDING 190-190 BINDING 219-219 BINDING 245-245 BINDING 257-257 BINDING 335-335

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKKLLLSVLMLLSISGLQAQSLSPSTQIHWDKGTLVIETPERPTDQQHVLGLTAPKME
CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCHHEEECCCCCCC
TVRVAFVGLGMRGPWAVWRFCNIPGVEVVALCDYEEDRAEASQKYLRDASLIPADIYSGE
EEEEEEEECCCCCCHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCC
KGYETLCQRPDIDLVYIATDWNHHFPVAKYAMKHGKHVAIEVPSAMNLEQCWSLIDLSEQ
CHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCC
TRLHCFILENCCYDYYEMNALAMAKDGVFGEIIRAEGAYIHELSAFWKSYWQDPNDNDTD
CEEEEEEEHHHHHHHHHHCCCEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC
NLHWRMKYNMENRGDVYATHGLGPVAQCMDIHRGDRFTTLVAMDTESFVGKQYVENLTGK
CEEEEEEECCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCC
EPKEFRNGDHTTTLMRTARGKVVEIQHNVMTPQPYNRLFKLTGTKGYATKYPTPEYALSG
CCHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCCC
DVMKDTAPNMDDINAHSFLNDAQKEALEKKYYHPILTKFGEKGRAMGHGGMDYIMDARLV
CCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
YCLQNGLPLDMDVYDLAEWCCLSELGALSMDNNCAAVTFPDFTRGHWDEMKGYKHAYASA
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHCCHHHHHCCC
EEEEATEAKAEAYTIAQKEVAAAANLWTLYDNVKNAADEKAQDKALKIYQRAKAKAHQQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKKLKVKK
HHHHCCCC
>Mature Secondary Structure
MKLKKLLLSVLMLLSISGLQAQSLSPSTQIHWDKGTLVIETPERPTDQQHVLGLTAPKME
CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCHHEEECCCCCCC
TVRVAFVGLGMRGPWAVWRFCNIPGVEVVALCDYEEDRAEASQKYLRDASLIPADIYSGE
EEEEEEEECCCCCCHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCC
KGYETLCQRPDIDLVYIATDWNHHFPVAKYAMKHGKHVAIEVPSAMNLEQCWSLIDLSEQ
CHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCC
TRLHCFILENCCYDYYEMNALAMAKDGVFGEIIRAEGAYIHELSAFWKSYWQDPNDNDTD
CEEEEEEEHHHHHHHHHHCCCEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC
NLHWRMKYNMENRGDVYATHGLGPVAQCMDIHRGDRFTTLVAMDTESFVGKQYVENLTGK
CEEEEEEECCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCC
EPKEFRNGDHTTTLMRTARGKVVEIQHNVMTPQPYNRLFKLTGTKGYATKYPTPEYALSG
CCHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCCC
DVMKDTAPNMDDINAHSFLNDAQKEALEKKYYHPILTKFGEKGRAMGHGGMDYIMDARLV
CCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
YCLQNGLPLDMDVYDLAEWCCLSELGALSMDNNCAAVTFPDFTRGHWDEMKGYKHAYASA
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHCCHHHHHCCC
EEEEATEAKAEAYTIAQKEVAAAANLWTLYDNVKNAADEKAQDKALKIYQRAKAKAHQQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKKLKVKK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA