Click here to switch to the map view.

The map label for this gene is yoaB [C]

Identifier: 148828384

GI number: 148828384

Start: 1837401

End: 1837751

Strand: Reverse

Name: yoaB [C]

Synonym: CGSHiGG_09955

Alternate gene names: 148828384

Gene position: 1837751-1837401 (Counterclockwise)

Preceding gene: 148828386

Following gene: 148828383

Centisome position: 97.38

GC content: 37.32

Gene sequence:

>351_bases
ATGACAATTCAACGCATTTTACCCAGTGCACGTTTAAGTGAAGTTTCAATTCATAACAACCTCGCCTATTTTGCAGGGCA
AGTTCCAGAATTAACTATCGAGCAAAATGCCTACGAACAAACCAAAGAAGTATTAGGTTTAATTGATAAATTGTTAGCAG
AAATTGGCTCCAATAAAAGCAACATTTTAACCGCGCAAATTTTCTTAGCTGATATGAAAGATTATGCACAATTAAATCAA
GCTTGGGATGAATGGGTCGATCATGTTAGCCCACCAAGTCGAGCGACAGTGGAAGCTAAATTAGCGGATCCTCGTTGGAA
AGTTGAAATTGTTATTATTGCAACTTGTTAG

Upstream 100 bases:

>100_bases
AATTGAGAATAATTGTCGGGTATTTTAGCCTAGTAAAGAGGATTTTACAAAGCAGTAAAGGCTATTTAGAATAGAAGAAA
ACACCCCAAAGGAGAATCCT

Downstream 100 bases:

>100_bases
TTTTTTAAGCCGAATAAACAGGAGAATATTATGGAAAATTGGACAAATGAAATTTGGGTAGCAATTGGTATCGCTTTTAT
TGTTGGATTATTTATTGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MTIQRILPSARLSEVSIHNNLAYFAGQVPELTIEQNAYEQTKEVLGLIDKLLAEIGSNKSNILTAQIFLADMKDYAQLNQ
AWDEWVDHVSPPSRATVEAKLADPRWKVEIVIIATC

Sequences:

>Translated_116_residues
MTIQRILPSARLSEVSIHNNLAYFAGQVPELTIEQNAYEQTKEVLGLIDKLLAEIGSNKSNILTAQIFLADMKDYAQLNQ
AWDEWVDHVSPPSRATVEAKLADPRWKVEIVIIATC
>Mature_115_residues
TIQRILPSARLSEVSIHNNLAYFAGQVPELTIEQNAYEQTKEVLGLIDKLLAEIGSNKSNILTAQIFLADMKDYAQLNQA
WDEWVDHVSPPSRATVEAKLADPRWKVEIVIIATC

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=52.6315789473684, Blast_Score=112, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13021; Mature: 12890

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQRILPSARLSEVSIHNNLAYFAGQVPELTIEQNAYEQTKEVLGLIDKLLAEIGSNKS
CCHHHHCCCCHHHHHHHHCCHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCC
NILTAQIFLADMKDYAQLNQAWDEWVDHVSPPSRATVEAKLADPRWKVEIVIIATC
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEEC
>Mature Secondary Structure 
TIQRILPSARLSEVSIHNNLAYFAGQVPELTIEQNAYEQTKEVLGLIDKLLAEIGSNKS
CHHHHCCCCHHHHHHHHCCHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCC
NILTAQIFLADMKDYAQLNQAWDEWVDHVSPPSRATVEAKLADPRWKVEIVIIATC
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]