Click here to switch to the map view.

The map label for this gene is yrbA [C]

Identifier: 148828244

GI number: 148828244

Start: 1678329

End: 1678586

Strand: Reverse

Name: yrbA [C]

Synonym: CGSHiGG_09050

Alternate gene names: 148828244

Gene position: 1678586-1678329 (Counterclockwise)

Preceding gene: 148828245

Following gene: 148828243

Centisome position: 88.95

GC content: 34.11

Gene sequence:

>258_bases
ATGGAACTTCAAAAAATTGAACAAATTTTAAAAGACACGCTAAATATCGTAGAAGTCTATGCACAAGGTGAAAATGCACA
TTTTGGTGTAATTGTAGTGAGTGATGAAATTGCTGCACTATCTCGTGTAAAACAACAACAAACGATTTATGCCCCTTTAA
TGCCTTATTTTAGCACTGGTGAAATTCACGCTCTAACCATCAAAACTTATACCGTAGAAAAATGGAAACGCGATCGTGCA
TTAAACCAGTTTAATTAA

Upstream 100 bases:

>100_bases
GATTAGTTTATCCACCAAAACAATTATTAACCCTAGCAGATCTTGTTGGTTTATCTGATTGGATCGCAAATTTTACATAG
CTTACTTAAACGGAAATCCA

Downstream 100 bases:

>100_bases
GGATTTAAAATGGATAAATTTCGTGTTTATGGGCAATCTCGTTTAAGTGGAAGTGTAAATATTTCAGGCGCAAAAAACGC
CGCACTTCCAATTCTTTTTG

Product: BolA superfamily transcriptional regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MELQKIEQILKDTLNIVEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTGEIHALTIKTYTVEKWKRDRA
LNQFN

Sequences:

>Translated_85_residues
MELQKIEQILKDTLNIVEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTGEIHALTIKTYTVEKWKRDRA
LNQFN
>Mature_85_residues
MELQKIEQILKDTLNIVEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTGEIHALTIKTYTVEKWKRDRA
LNQFN

Specific function: Unknown

COG id: COG5007

COG function: function code K; Predicted transcriptional regulator, BolA superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bolA/yrbA family [H]

Homologues:

Organism=Escherichia coli, GI87082226, Length=84, Percent_Identity=46.4285714285714, Blast_Score=89, Evalue=6e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002634 [H]

Pfam domain/function: PF01722 BolA [H]

EC number: NA

Molecular weight: Translated: 9797; Mature: 9797

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELQKIEQILKDTLNIVEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTG
CCHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCHHHHHHHHHHHHHEECCCCCCCCCC
EIHALTIKTYTVEKWKRDRALNQFN
CEEEEEEEEEEHHHHHHHCCCCCCC
>Mature Secondary Structure
MELQKIEQILKDTLNIVEVYAQGENAHFGVIVVSDEIAALSRVKQQQTIYAPLMPYFSTG
CCHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCHHHHHHHHHHHHHEECCCCCCCCCC
EIHALTIKTYTVEKWKRDRALNQFN
CEEEEEEEEEEHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]