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The map label for this gene is araD [C]

Identifier: 148828198

GI number: 148828198

Start: 1626321

End: 1627109

Strand: Direct

Name: araD [C]

Synonym: CGSHiGG_08780

Alternate gene names: 148828198

Gene position: 1626321-1627109 (Clockwise)

Preceding gene: 148828189

Following gene: 148828199

Centisome position: 86.18

GC content: 32.57

Gene sequence:

>789_bases
ATGGAAAAAGAAAAAAGCTTAGGTAATCAAGCTCTAATCAGAGGATTACGATTATTAGATATTCTTAGCAATTATCCTAA
CGGTTGCCCACTTGCTAAATTAGCTGAACTTGCTAATTTAAATAAAAGTACCGCACATCGGTTGTTACAAGGATTACAAA
ATGAAGGTTATGTCAAACCAGCAAATGCTGCTGGTAGTTATCGATTAACCATAAAATGTTTAAGTATTGGTCAAAAAGTG
TTGTCGTCTATGAATATTATTCACGTGGCTTCACCTTATTTAGAACAACTTAATCTGAAATTAGGCGAAACTATCAATTT
CTCAAAAAGGGAAGATGATCATGCTATTATGATCTATAAATTAGAGCCGACTAATGGAATGTTAAAAACACGAGCTTATA
TTGGCCAATACTTGAAATTATATTGCTCTGCAATGGGAAAAATTTTCTTAGCATATGAAAAAAAAGTAGATTACCTTTCT
CATTATTGGCAATCGCATCAAAGGGAAATTAAGAAATTAACTCGTTATACGATTACAGAATTAGATGATATAAAACTTGA
ACTTGAAACAATCCGTCAAACAGCTTATGCGATGGATAGAGAAGAAAATGAACTAGGCGTAACCTGTATTGCTTGCCCAA
TTTTTGATTCATTTGGTCAAGTGGAATACGCTATCTCAGTTTCAATGTCTATTTATAGACTCAATAAATTTGGTACAGAT
GCTTTTTTACAAGAAATCAGGAAGACGGCTGAACAGATTTCTTTAGAATTGGGATATGAAAATATCTAG

Upstream 100 bases:

>100_bases
TTATAAATCAATATGTTAAAATAATTTTACTGATTTTGTGATCTAGATCCTATTTTCTTGTGATAATATTTCATATTGTG
AAATGAATATTGAGGTAAAA

Downstream 100 bases:

>100_bases
CATAAATATCATATAATAACAGATAAAATATTCTAAAATTAATTGCACTTTCTATGTTATTAAAAGTAATCATACATAAT
AAAATCTTCTTAATTATTTG

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKPANAAGSYRLTIKCLSIGQKV
LSSMNIIHVASPYLEQLNLKLGETINFSKREDDHAIMIYKLEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEKKVDYLS
HYWQSHQREIKKLTRYTITELDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRLNKFGTD
AFLQEIRKTAEQISLELGYENI

Sequences:

>Translated_262_residues
MEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKPANAAGSYRLTIKCLSIGQKV
LSSMNIIHVASPYLEQLNLKLGETINFSKREDDHAIMIYKLEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEKKVDYLS
HYWQSHQREIKKLTRYTITELDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRLNKFGTD
AFLQEIRKTAEQISLELGYENI
>Mature_262_residues
MEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKPANAAGSYRLTIKCLSIGQKV
LSSMNIIHVASPYLEQLNLKLGETINFSKREDDHAIMIYKLEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEKKVDYLS
HYWQSHQREIKKLTRYTITELDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRLNKFGTD
AFLQEIRKTAEQISLELGYENI

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain

Homologues:

Organism=Escherichia coli, GI1789999, Length=258, Percent_Identity=64.3410852713178, Blast_Score=351, Evalue=3e-98,
Organism=Escherichia coli, GI87082359, Length=253, Percent_Identity=31.2252964426877, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1786715, Length=254, Percent_Identity=29.9212598425197, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788131, Length=233, Percent_Identity=29.6137339055794, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786468, Length=254, Percent_Identity=29.1338582677165, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790752, Length=264, Percent_Identity=31.8181818181818, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788581, Length=255, Percent_Identity=25.4901960784314, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI145693096, Length=143, Percent_Identity=31.4685314685315, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1032_HAEIN (P44996)

Other databases:

- EMBL:   L42023
- PIR:   D64165
- RefSeq:   NP_439192.1
- ProteinModelPortal:   P44996
- SMR:   P44996
- GeneID:   950700
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1032
- NMPDR:   fig|71421.1.peg.994
- TIGR:   HI_1032
- HOGENOM:   HBG739407
- OMA:   HAIMIYK
- ProtClustDB:   CLSK870422
- BioCyc:   HINF71421:HI_1032-MONOMER
- GO:   GO:0006350
- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00346

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR

EC number: NA

Molecular weight: Translated: 29866; Mature: 29866

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS51077 HTH_ICLR; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKP
CCCHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
ANAAGSYRLTIKCLSIGQKVLSSMNIIHVASPYLEQLNLKLGETINFSKREDDHAIMIYK
CCCCCCEEEEEHHHHHHHHHHHHCCCCEECCHHHHHHCCHHCCCCCCCCCCCCCEEEEEE
LEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEKKVDYLSHYWQSHQREIKKLTRYTITE
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRLNKFGTD
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHCCCCEEEEEEEHHHEEHHHHCCHH
AFLQEIRKTAEQISLELGYENI
HHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEKEKSLGNQALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKP
CCCHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
ANAAGSYRLTIKCLSIGQKVLSSMNIIHVASPYLEQLNLKLGETINFSKREDDHAIMIYK
CCCCCCEEEEEHHHHHHHHHHHHCCCCEECCHHHHHHCCHHCCCCCCCCCCCCCEEEEEE
LEPTNGMLKTRAYIGQYLKLYCSAMGKIFLAYEKKVDYLSHYWQSHQREIKKLTRYTITE
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDDIKLELETIRQTAYAMDREENELGVTCIACPIFDSFGQVEYAISVSMSIYRLNKFGTD
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHCCCCEEEEEEEHHHEEHHHHCCHH
AFLQEIRKTAEQISLELGYENI
HHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800