Click here to switch to the map view.

The map label for this gene is ygbM [C]

Identifier: 148828181

GI number: 148828181

Start: 1605994

End: 1606770

Strand: Direct

Name: ygbM [C]

Synonym: CGSHiGG_08675

Alternate gene names: 148828181

Gene position: 1605994-1606770 (Clockwise)

Preceding gene: 148828180

Following gene: 148828182

Centisome position: 85.1

GC content: 37.84

Gene sequence:

>777_bases
ATGCCTAAATTTGCAGCAAACTTAACAATGATGTTTAACGAAGTGCCATTTTTAGATCGCTTTGAAGCGGCGGCTAAAGC
AGGCTTTAAATATGTCGAATTCTTATGGCCTTATGATTACCCTGCACAAGAACTCAAAGCAATTTTAGATAAGCATGGCC
TAAAAATTGTGTTATTTAATACCCCAGCTGGTGATGTAAACAAAGGTGAATGGGGTGTTTCGGCAATCCCTGGCCGAGAA
GCTGATAGCCATAGAGATATTGATTTGGCTCTTGAATATGCACTTGCATTAGGTTGTCCAAATGTACATATCATGTCAGC
AGTTGTGCCAGAAGGTGCAAGCCGTGAAGAATATAAACAAACCTTTATTAAAAACGTACGCTATGCATCTGATAAATATA
AACCATATGGAATCAAAATTCAGCTTGAAGCTTTAAGCCCTGAAGTGAAACCTAATTATTTACTCAAAAGCCAATTTGAT
ACGCTTGAAGTGGTGGAATTGGTTGATCGTGATAATGTATTTGTTCAACTCGACTATTTTCATGCACAAAATGTAGATGG
CAATCTTGCACGTTTAACCGATAAATTAAATGGCAAATTTGCTCACGTTCAAATTGCTTCTGTACCAGACCGTCATGAAC
CCGACGAAGGTGAAATTAACTACCAATATATCTTCGATAAACTAGATGAAATCGGTTATACAGGCTATGTTGGCTGTGAA
TACAAACCACGTGGTGAAACCGTAACGGGATTGGATTGGTTTCAGAAGTATAAATAA

Upstream 100 bases:

>100_bases
TAGAAGAAACCGCAAAATTATTCTTCACTTTGCAAGGACAAAAAATCCGCTATCTCACTGATACCGAAGTGAAAGATTTA
GAAAATAGAGGAAAATAATT

Downstream 100 bases:

>100_bases
TTGATAAAAATTTAACCGCACTTTAAATTTTAAAGTGTTATCTCAGCTAAACGTTCTGCTTTGGCAGAAGGTTTTTGAAT
AAGAGGGCATCTTTATGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MPKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKIVLFNTPAGDVNKGEWGVSAIPGRE
ADSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQTFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFD
TLEVVELVDRDNVFVQLDYFHAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCE
YKPRGETVTGLDWFQKYK

Sequences:

>Translated_258_residues
MPKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKIVLFNTPAGDVNKGEWGVSAIPGRE
ADSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQTFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFD
TLEVVELVDRDNVFVQLDYFHAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCE
YKPRGETVTGLDWFQKYK
>Mature_257_residues
PKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKIVLFNTPAGDVNKGEWGVSAIPGREA
DSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQTFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFDT
LEVVELVDRDNVFVQLDYFHAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCEY
KPRGETVTGLDWFQKYK

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=262, Percent_Identity=40.0763358778626, Blast_Score=200, Evalue=1e-51,
Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=38.2716049382716, Blast_Score=169, Evalue=3e-42,
Organism=Escherichia coli, GI1789095, Length=258, Percent_Identity=59.6899224806201, Blast_Score=340, Evalue=7e-95,
Organism=Escherichia coli, GI1786718, Length=258, Percent_Identity=39.1472868217054, Blast_Score=199, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17552022, Length=240, Percent_Identity=35.8333333333333, Blast_Score=173, Evalue=8e-44,
Organism=Drosophila melanogaster, GI17530883, Length=258, Percent_Identity=29.8449612403101, Blast_Score=142, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 29405; Mature: 29273

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKIVLFN
CCCHHHHEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEE
TPAGDVNKGEWGVSAIPGREADSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH
TFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFDTLEVVELVDRDNVFVQLDYF
HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHCCCCEEEEEEEE
HAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCE
EECCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHCCCCEEECCE
YKPRGETVTGLDWFQKYK
ECCCCCEEECHHHHHHCC
>Mature Secondary Structure 
PKFAANLTMMFNEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKIVLFN
CCHHHHEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEE
TPAGDVNKGEWGVSAIPGREADSHRDIDLALEYALALGCPNVHIMSAVVPEGASREEYKQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH
TFIKNVRYASDKYKPYGIKIQLEALSPEVKPNYLLKSQFDTLEVVELVDRDNVFVQLDYF
HHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHCCCCEEEEEEEE
HAQNVDGNLARLTDKLNGKFAHVQIASVPDRHEPDEGEINYQYIFDKLDEIGYTGYVGCE
EECCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHCCCCEEECCE
YKPRGETVTGLDWFQKYK
ECCCCCEEECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]