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The map label for this gene is rlpB [C]

Identifier: 148828099

GI number: 148828099

Start: 1511017

End: 1511520

Strand: Direct

Name: rlpB [C]

Synonym: CGSHiGG_08175

Alternate gene names: 148828099

Gene position: 1511017-1511520 (Clockwise)

Preceding gene: 148828098

Following gene: 148828100

Centisome position: 80.07

GC content: 36.9

Gene sequence:

>504_bases
ATGATCAACTCAATCAAGACTTTACTGCTTATCGCAACATTAGCAATTCTTTCTGCTTGCGGTTGGCATTTTCAACAGTC
GGTTACTATGCCAAGTGAATGGCGAACATTAGCCCTTGAAAGTGATGATTCTTATAATGATTTTACTGTTATTATGCGTC
GCAAGTTGCAGGAAAATCAGGTTAATGTCGTCAATTTAGAACAAAATATTCCCATTTTACGTATTAATAAACAGATTACT
TCAGATCAAGTCGCGTCTATTTTTAAGCACGGACGTGAGGCAGAAAAACTTTTAATGTTGGAAGTAGAAGCCACTTTCCG
CCTTGCTAATGGCGAAAGCTATCCAATCAATGCGAAAGTAAACCGTACTTTCTTTGATAATGCACGTGCAGCATTAGCCA
AATCAGAAGAACGAGAGGTAATTTGGAATGATATGCGCGAGCAAGTAGCGCGTCAATTAATCGTAAAAATAATTGCGTTA
CAAAATCAAATAAAAAGGAAATAA

Upstream 100 bases:

>100_bases
CCATAATACATAGGGTGTGTGGATTTAAAATTCACGCACCATTTTTTATAGGTATGTGAAATATTTACATTTTACACGTC
CTACAATAAAGGTAATTTTT

Downstream 100 bases:

>100_bases
TGAACCGCATTTTTCCAGAGCAACTAAATCATCATCTTGCGCAAGGCTTGGCTAGAGTTTATCTCTTGCAAGGGCAAGAT
CCTTTATTACTTAGTGAAAC

Product: rare lipoprotein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MINSIKTLLLIATLAILSACGWHFQQSVTMPSEWRTLALESDDSYNDFTVIMRRKLQENQVNVVNLEQNIPILRINKQIT
SDQVASIFKHGREAEKLLMLEVEATFRLANGESYPINAKVNRTFFDNARAALAKSEEREVIWNDMREQVARQLIVKIIAL
QNQIKRK

Sequences:

>Translated_167_residues
MINSIKTLLLIATLAILSACGWHFQQSVTMPSEWRTLALESDDSYNDFTVIMRRKLQENQVNVVNLEQNIPILRINKQIT
SDQVASIFKHGREAEKLLMLEVEATFRLANGESYPINAKVNRTFFDNARAALAKSEEREVIWNDMREQVARQLIVKIIAL
QNQIKRK
>Mature_167_residues
MINSIKTLLLIATLAILSACGWHFQQSVTMPSEWRTLALESDDSYNDFTVIMRRKLQENQVNVVNLEQNIPILRINKQIT
SDQVASIFKHGREAEKLLMLEVEATFRLANGESYPINAKVNRTFFDNARAALAKSEEREVIWNDMREQVARQLIVKIIAL
QNQIKRK

Specific function: Unknown

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family

Homologues:

Organism=Escherichia coli, GI1786860, Length=160, Percent_Identity=34.375, Blast_Score=109, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y922_HAEIN (Q57457)

Other databases:

- EMBL:   L42023
- PIR:   I64102
- RefSeq:   NP_439082.2
- ProteinModelPortal:   Q57457
- SMR:   Q57457
- GeneID:   950738
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0922
- TIGR:   HI_0922
- HOGENOM:   HBG644504
- OMA:   TAGCGFH
- ProtClustDB:   CLSK870398
- BioCyc:   HINF71421:HI_0922-MONOMER
- InterPro:   IPR007485

Pfam domain/function: PF04390 RplB

EC number: NA

Molecular weight: Translated: 19271; Mature: 19271

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSIKTLLLIATLAILSACGWHFQQSVTMPSEWRTLALESDDSYNDFTVIMRRKLQENQ
CCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
VNVVNLEQNIPILRINKQITSDQVASIFKHGREAEKLLMLEVEATFRLANGESYPINAKV
CEEEEECCCCCEEEECCCCCHHHHHHHHHCCCCHHHEEEEEEEEEEEEECCCCCCCCCEE
NRTFFDNARAALAKSEEREVIWNDMREQVARQLIVKIIALQNQIKRK
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MINSIKTLLLIATLAILSACGWHFQQSVTMPSEWRTLALESDDSYNDFTVIMRRKLQENQ
CCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
VNVVNLEQNIPILRINKQITSDQVASIFKHGREAEKLLMLEVEATFRLANGESYPINAKV
CEEEEECCCCCEEEECCCCCHHHHHHHHHCCCCHHHEEEEEEEEEEEEECCCCCCCCCEE
NRTFFDNARAALAKSEEREVIWNDMREQVARQLIVKIIALQNQIKRK
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800