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The map label for this gene is 148828074

Identifier: 148828074

GI number: 148828074

Start: 1477908

End: 1478471

Strand: Direct

Name: 148828074

Synonym: CGSHiGG_08020

Alternate gene names: NA

Gene position: 1477908-1478471 (Clockwise)

Preceding gene: 148828072

Following gene: 148828075

Centisome position: 78.31

GC content: 33.87

Gene sequence:

>564_bases
ATGCGACAAGCTAAAACAGACTTAGCTGAACAGATTTTTTCAGCGACAGATCGTTTAATGGCAAGAGAAGGGTTGAATCA
ACTTTCTATGCACAAACTTGCGAAAGAAGCAAATGTGGCCGCAGGAACGATTTACCTTTATTTTAAAAACAAAGATGAGT
TGCTCGAACAATTTGCACACAGAGTGTTTTCAATGTTTATGGCAACACTTGAAAAAGATTTTGATGAAACTAAACCTTTT
TTCGAACAGTATCGACAAATGTGGAAAAACATTTGGTATTTCTTACAAGAAAATCCCACTATCTTATCCAATTTAAAGCA
ATATGAATCTTTGCCTAATTTCAAGGATATTTGTAAAAACGTTAAAAATTGCCGTTGGGATTTATTTTGTCATCAAGCCA
AAAAAGCTGGCTTATTAGCGGAATTATCTGAAGATATTCTCTTTTTATTAAGTTTGAAAACGGCGATAAATTTAGCCTCT
GATGCAAAATTTATCGATTTCGATCTTAAGCCTGAAATTTTAGAATCTGTGATTGAACGCTCTTGGCGTGCGATTCAGAA
ATAA

Upstream 100 bases:

>100_bases
CGTTTTTTGTTTTTTAACTTGCCAAAAAACAAAAAATAAATAAAATGAACGCTCATTCATTTTTGAGCAATTATTGCTCC
TTATTTTACTCAAGGATCTT

Downstream 100 bases:

>100_bases
TTGTTGTTATTTTTATAACGGAGCTTTAAACATGAGTCAAACTCAACATCAAAGACCAAAACGCTCACATATTTTCTTTA
TGAAAATAATTTTAGTGGTA

Product: transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRQAKTDLAEQIFSATDRLMAREGLNQLSMHKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPF
FEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKNVKNCRWDLFCHQAKKAGLLAELSEDILFLLSLKTAINLAS
DAKFIDFDLKPEILESVIERSWRAIQK

Sequences:

>Translated_187_residues
MRQAKTDLAEQIFSATDRLMAREGLNQLSMHKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPF
FEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKNVKNCRWDLFCHQAKKAGLLAELSEDILFLLSLKTAINLAS
DAKFIDFDLKPEILESVIERSWRAIQK
>Mature_187_residues
MRQAKTDLAEQIFSATDRLMAREGLNQLSMHKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPF
FEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKNVKNCRWDLFCHQAKKAGLLAELSEDILFLLSLKTAINLAS
DAKFIDFDLKPEILESVIERSWRAIQK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22033; Mature: 22033

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQAKTDLAEQIFSATDRLMAREGLNQLSMHKLAKEANVAAGTIYLYFKNKDELLEQFAH
CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHH
RVFSMFMATLEKDFDETKPFFEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
VKNCRWDLFCHQAKKAGLLAELSEDILFLLSLKTAINLASDAKFIDFDLKPEILESVIER
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
SWRAIQK
HHHHHCC
>Mature Secondary Structure
MRQAKTDLAEQIFSATDRLMAREGLNQLSMHKLAKEANVAAGTIYLYFKNKDELLEQFAH
CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHH
RVFSMFMATLEKDFDETKPFFEQYRQMWKNIWYFLQENPTILSNLKQYESLPNFKDICKN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHH
VKNCRWDLFCHQAKKAGLLAELSEDILFLLSLKTAINLASDAKFIDFDLKPEILESVIER
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH
SWRAIQK
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]