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The map label for this gene is speF [H]

Identifier: 148827796

GI number: 148827796

Start: 1149290

End: 1151452

Strand: Direct

Name: speF [H]

Synonym: CGSHiGG_06325

Alternate gene names: 148827796

Gene position: 1149290-1151452 (Clockwise)

Preceding gene: 148827795

Following gene: 148827797

Centisome position: 60.9

GC content: 36.48

Gene sequence:

>2163_bases
ATGCCAAACTTAAAAATTGCATATAGTCCAAAAGTTGAACAATATTTCTCTACAAATAGAGAATTAGTTGAAATTACCAA
AACAGACTTTACTGATGTTGCCGCTATTGTGTTGACATCAGGAGATGTAGGTGAATACCTTGAACGTATTCAAGCAACAA
ATTTTGGTATCCCAGTATTTGTTGTTCAAACTGAAGAAGAACAAGTTGATCCGAAATTCTATAATGCTATTTATCATATT
CAAGATTTAAATGGTTATGACATTAAGCTTTATAGTCGTCAAATCGAAACAGCTGCAAGACTTTATGAAGAAAAAATGTT
ACCTCCATTCTTCAAAATGTTAAGTGAATATGTAGAAATGGGTAATATTGCTTTTGACTGTCCGGGACATCAAGGTGGTC
AATACTATCGTAAACACCCAGCAGGTCGCTTCCTTTATGACTTCTATGGTGAAAATATTTTCCGTTCAGATATTTGTAAT
GCTGACGTGAAATTAGGTGACTTGTTAATTCACGAAGGTGCAGCTTGTGATGCACAAAAATATGCTGCTCAAGTATTCAA
TGCAGATAAAACTTACTTCGTATTAAATGGTACATCTTCTTCAAACAAAGTTGCATTAAACGCAGTACTTGCTCCGGGCG
ATTTAGTATTATTTGACCGTAATAACCATAAATCAAACCACCATGGTGCATTAATTCAAGCGGGTGCAACCCCAATTTAC
TTAGAAACTGCACGTAACCCATTTGGTTTCATTGGTGGTATCGATAGTCACTGCTTCGAAGAAGATTATTTGAAATCATT
AATTAAAGAAGTCGCACCTGAAAAATTAAACCAAAAACGTCCATTCCGTTTAGCCGTTATTCAATTAGGTACTTATGACG
GTACAATTTATAACGCACGTCAAGTGGTAGATAAAATTGGTCATCTTTGTGACTACATCTTATTCGACTCTGCATGGGTA
GGTTATGAACAATTCATTCCAATGATGAAAGACTGCTCTCCATTATTGCTTGAATTAAATGAAAATGACCCTGGTATTTT
AGTGACTCAATCTGTTCATAAACAACAAGCAGGTTTCTCACAAACTTCACAAATTCACAAAAAAGATAAACACATTAAAG
GTCAAGATCGTTATGTAAACCACAAACGTTTCAATAATGCCTTTATGTTACATGCGTCAACCAGTCCGTTCTATCCATTA
TTTGCGGCGTTAGATGTGAATGCAAAAATTCAAGGTAGCGAAGCAGGTCGTCGTTTATGGCATGAATGTGTGAAAGTTGG
TATCGAAGCACGTAAATTAGTATTAAATCACTGTGAATTAATTCGTCCATTTATTCCAACCACAATTAAAGGTAAAAAAT
GGCAAGATTATGACACAGAAGAAATCGCAACTAACCTCGAGTTCTTCAAATTCCACCCAACAGATACATGGCATAAATTT
GAAGGCTATGCTGACGAACAATATTTCGTTGACCCATGTAAATTCTTGCTTACCACGCCAGGTATTAGCTTAGAAACAGG
CGAATATGAAAAATTTGGTGTACCAGCAACCATTCTTGCAAACTACTTACGAGAAAACGGTATTATTCCGGAAAAATGTG
ACTTGAATTCAATCTTATTCTTGCTCACTCCGGCAGAAACCCTCACCAAAATGCAAACTTTGGTCGCTCAAATCGCCTTG
TTTGAAAAACACATTAAACAAGACTCTTTATTAAAAGATGTATTGCCAACTGTGTATAAAAACAATGAAGACCGTTACAA
AGGCTACACCATCCGTCAATTATGCCAAGAAATGCATGATCTTTATGTAAGCCGCAATGTGAAACAACTTCAAAAAGATT
TATTCCGCAAAGCGACATTACCAGAATATGTATTAAATCCACATGATGCAAATATTGAGTTAGTACGTAACAAAGTTGAA
CTCGTTCCATTGACTGATATTGTTGGTCGTGTGGCTGCGGAAGGTGCATTACCTTATCCTCCAGGTGTGTTATGTGTGGT
GCCTGGAGAAAGATGGAGTCCAACTGCACAAAAATACTTCCTTGCATTAGAAGAAGGTATCAACACATTACCTGGTTTCG
CACCTGAAATCCAAGGGGTTTACTTACAAAAAGACCCTGATGGACGTACTCGTGCATATGGCTATGTTTTAACTGACTAT
TAA

Upstream 100 bases:

>100_bases
ATCTAGAGAGGTTTGTTTTATTCTAAATAAATCTATTGCGTTATTAAAATTAATAACGCAGGGTAACTTTACGTCAAAAA
ATAAATAAAAGGAGTTTATT

Downstream 100 bases:

>100_bases
TAAAGTGAGGTTGTGAGGATCTTCCTCATAACCCTCTCAGCACAAACAAAAGAAAGTGCGGTTAAAAACATCTGATTTTT
TGACCGCACTTGTAGGAGTA

Product: ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 719

Protein sequence:

>720_residues
MPNLKIAYSPKVEQYFSTNRELVEITKTDFTDVAAIVLTSGDVGEYLERIQATNFGIPVFVVQTEEEQVDPKFYNAIYHI
QDLNGYDIKLYSRQIETAARLYEEKMLPPFFKMLSEYVEMGNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICN
ADVKLGDLLIHEGAACDAQKYAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIY
LETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWV
GYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFSQTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPL
FAALDVNAKIQGSEAGRRLWHECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKF
EGYADEQYFVDPCKFLLTTPGISLETGEYEKFGVPATILANYLRENGIIPEKCDLNSILFLLTPAETLTKMQTLVAQIAL
FEKHIKQDSLLKDVLPTVYKNNEDRYKGYTIRQLCQEMHDLYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELVRNKVE
LVPLTDIVGRVAAEGALPYPPGVLCVVPGERWSPTAQKYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY

Sequences:

>Translated_720_residues
MPNLKIAYSPKVEQYFSTNRELVEITKTDFTDVAAIVLTSGDVGEYLERIQATNFGIPVFVVQTEEEQVDPKFYNAIYHI
QDLNGYDIKLYSRQIETAARLYEEKMLPPFFKMLSEYVEMGNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICN
ADVKLGDLLIHEGAACDAQKYAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIY
LETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWV
GYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFSQTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPL
FAALDVNAKIQGSEAGRRLWHECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKF
EGYADEQYFVDPCKFLLTTPGISLETGEYEKFGVPATILANYLRENGIIPEKCDLNSILFLLTPAETLTKMQTLVAQIAL
FEKHIKQDSLLKDVLPTVYKNNEDRYKGYTIRQLCQEMHDLYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELVRNKVE
LVPLTDIVGRVAAEGALPYPPGVLCVVPGERWSPTAQKYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY
>Mature_719_residues
PNLKIAYSPKVEQYFSTNRELVEITKTDFTDVAAIVLTSGDVGEYLERIQATNFGIPVFVVQTEEEQVDPKFYNAIYHIQ
DLNGYDIKLYSRQIETAARLYEEKMLPPFFKMLSEYVEMGNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICNA
DVKLGDLLIHEGAACDAQKYAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIYL
ETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVG
YEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFSQTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPLF
AALDVNAKIQGSEAGRRLWHECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKFE
GYADEQYFVDPCKFLLTTPGISLETGEYEKFGVPATILANYLRENGIIPEKCDLNSILFLLTPAETLTKMQTLVAQIALF
EKHIKQDSLLKDVLPTVYKNNEDRYKGYTIRQLCQEMHDLYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELVRNKVEL
VPLTDIVGRVAAEGALPYPPGVLCVVPGERWSPTAQKYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI1786909, Length=718, Percent_Identity=66.5738161559889, Blast_Score=1016, Evalue=0.0,
Organism=Escherichia coli, GI87082193, Length=718, Percent_Identity=66.1559888579387, Blast_Score=1003, Evalue=0.0,
Organism=Escherichia coli, GI221142684, Length=632, Percent_Identity=32.753164556962, Blast_Score=339, Evalue=4e-94,
Organism=Escherichia coli, GI1790573, Length=619, Percent_Identity=35.2180936995153, Blast_Score=332, Evalue=3e-92,
Organism=Escherichia coli, GI1786384, Length=630, Percent_Identity=34.2857142857143, Blast_Score=315, Evalue=8e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]

EC number: =4.1.1.17 [H]

Molecular weight: Translated: 81931; Mature: 81800

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNLKIAYSPKVEQYFSTNRELVEITKTDFTDVAAIVLTSGDVGEYLERIQATNFGIPVF
CCCCEEEECCCHHHHHCCCCEEEEEECCCCHHEEEEEEECCCHHHHHHHHHHCCCCCEEE
VVQTEEEQVDPKFYNAIYHIQDLNGYDIKLYSRQIETAARLYEEKMLPPFFKMLSEYVEM
EEECCHHHCCHHHHHHEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICNADVKLGDLLIHEGAACDAQK
CCEEEECCCCCCCCHHHHCCCCCCHHHHHCCCHHHHHCCCCCCEECCEEEECCCCCCHHH
YAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIY
HHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEECCCCEEE
LETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNAR
EEECCCCCCEECCCCHHCCHHHHHHHHHHHHCHHHHCCCCCEEEEEEEEECCCCCCHHHH
QVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHCCCH
QTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPLFAALDVNAKIQGSEAGRRLW
HHHHHHHHHCCCCCCCCCCCHHCCCCEEEEEECCCCCCEEEEEEECCCEECCCHHHHHHH
HECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKF
HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCHHC
EGYADEQYFVDPCKFLLTTPGISLETGEYEKFGVPATILANYLRENGIIPEKCDLNSILF
CCCCCCCEECCHHHHHHCCCCCEEECCCCHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEE
LLTPAETLTKMQTLVAQIALFEKHIKQDSLLKDVLPTVYKNNEDRYKGYTIRQLCQEMHD
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
LYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELVRNKVELVPLTDIVGRVAAEGALPYP
HHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCEEEEEHHHHHHHHHHCCCCCCC
PGVLCVVPGERWSPTAQKYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY
CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECC
>Mature Secondary Structure 
PNLKIAYSPKVEQYFSTNRELVEITKTDFTDVAAIVLTSGDVGEYLERIQATNFGIPVF
CCCEEEECCCHHHHHCCCCEEEEEECCCCHHEEEEEEECCCHHHHHHHHHHCCCCCEEE
VVQTEEEQVDPKFYNAIYHIQDLNGYDIKLYSRQIETAARLYEEKMLPPFFKMLSEYVEM
EEECCHHHCCHHHHHHEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICNADVKLGDLLIHEGAACDAQK
CCEEEECCCCCCCCHHHHCCCCCCHHHHHCCCHHHHHCCCCCCEECCEEEECCCCCCHHH
YAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIY
HHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEECCCCEEE
LETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNAR
EEECCCCCCEECCCCHHCCHHHHHHHHHHHHCHHHHCCCCCEEEEEEEEECCCCCCHHHH
QVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHCCCH
QTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPLFAALDVNAKIQGSEAGRRLW
HHHHHHHHHCCCCCCCCCCCHHCCCCEEEEEECCCCCCEEEEEEECCCEECCCHHHHHHH
HECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKF
HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCHHC
EGYADEQYFVDPCKFLLTTPGISLETGEYEKFGVPATILANYLRENGIIPEKCDLNSILF
CCCCCCCEECCHHHHHHCCCCCEEECCCCHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEE
LLTPAETLTKMQTLVAQIALFEKHIKQDSLLKDVLPTVYKNNEDRYKGYTIRQLCQEMHD
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
LYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELVRNKVELVPLTDIVGRVAAEGALPYP
HHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCEEEEEHHHHHHHHHHCCCCCCC
PGVLCVVPGERWSPTAQKYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY
CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]