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The map label for this gene is vapD [H]

Identifier: 148827646

GI number: 148827646

Start: 996761

End: 997039

Strand: Reverse

Name: vapD [H]

Synonym: CGSHiGG_05475

Alternate gene names: 148827646

Gene position: 997039-996761 (Counterclockwise)

Preceding gene: 148827647

Following gene: 148827645

Centisome position: 52.83

GC content: 35.84

Gene sequence:

>279_bases
ATGTACGCGATTGCTTTTGATTTAGTTGTAAAAGACACTCAAGATTATCATCCAAAGGGTGTTCAACAGGCTTATACAGA
CATTGGCGCAGTTTTAGCAAAATTTGGTTTTGTTAGAACACAAGGAAGTTTATATACCAATATGAATGAAGATATGGCGA
ATCTCTTTCAGGCAATGAATGCACTAAAACAGTTGGCGTGGATTTCTCAGTCTGTACGAGATATTCGCGCTTTTCGTATT
GAGCAATGGTCTGATTTTACTGATTTTATACGAAATTAA

Upstream 100 bases:

>100_bases
GCGATGCGTTGGTAAATATCACATTGTTACAATCTGGTGAAAAAGACATTTATCGCTTATCTCACCTGCTTGAAGATCCC
GAAGCTGAATAAGGAAAATT

Downstream 100 bases:

>100_bases
CATTTGCCTAGATAAGCCTTACAGGCTTCCTTGCTTAATCCCCCTCAGACAGTATAATGGCGGCGTTTTATTAACTTTAA
TCAGGTATGACTATGTTTAA

Product: virulence-associated protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MYAIAFDLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYTNMNEDMANLFQAMNALKQLAWISQSVRDIRAFRI
EQWSDFTDFIRN

Sequences:

>Translated_92_residues
MYAIAFDLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYTNMNEDMANLFQAMNALKQLAWISQSVRDIRAFRI
EQWSDFTDFIRN
>Mature_92_residues
MYAIAFDLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYTNMNEDMANLFQAMNALKQLAWISQSVRDIRAFRI
EQWSDFTDFIRN

Specific function: Unknown

COG id: COG3309

COG function: function code S; Uncharacterized virulence-associated protein D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016368 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10646; Mature: 10646

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAIAFDLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYTNMNEDMANLFQAMN
CCEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHH
ALKQLAWISQSVRDIRAFRIEQWSDFTDFIRN
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure
MYAIAFDLVVKDTQDYHPKGVQQAYTDIGAVLAKFGFVRTQGSLYTNMNEDMANLFQAMN
CCEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHH
ALKQLAWISQSVRDIRAFRIEQWSDFTDFIRN
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]