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The map label for this gene is intD [H]

Identifier: 148827585

GI number: 148827585

Start: 924429

End: 925310

Strand: Direct

Name: intD [H]

Synonym: CGSHiGG_05060

Alternate gene names: 148827585

Gene position: 924429-925310 (Clockwise)

Preceding gene: 148827584

Following gene: 148827591

Centisome position: 48.98

GC content: 42.06

Gene sequence:

>882_bases
GTGGAGCAGCTTAACAAAAAGCCCGAAAAAACGGTGGAGCAAGCCTTAATTTTATTGCTCAAAGACGCAGAGCATAAAAA
AGACAAACTCACCAAAATTCAGCACGCCAAATATTGGCGCGATGAAATCGGGAACAAGCTGCTTAGTTCTTTAACAAGTG
AAGATATTCAAAATGCGATTCCTACGCACGTTGTACGCACAGGGAAAATACTTTCCCCAGCAACCCAAAACCGCTATCGT
TCGTCCATTATGCGGGCAATCAATCTGGCAAAGCAAGCTGGTTGGATTGATGTCGTGCCTTATATCGCTAAAAATAGCGA
ACCCAAAAAACGCATCCGCTGGATTACTGAAAAGGAAGCAGAGCGATTATTAGATAGCTTAAATCTTAATTGGATGAAAG
ATGTCTGCCAGTTCGCCTTATTGACGGGGGCTAGAATGACGGAGATTTTGTCAATGACGTGGGATAAAATTAATTTTGCT
AACAAAATGGCAATAGTTACTGGCGATATTGCAAAATCTGGACGTGGACGTTCTCTGCCTTTAAGTGATGACGCAATTAA
TCTAATCAAAGAAAGGATGAAATATCAAGTGTCTCCCTATGTTTTTCATAGCGGAACAGGGAAACTACGTGATGATATTT
CACGAAGGGATTTTAAGCGCGCCTTGCAGCGAGCCAATATTAAGAATTTCCGATTTCATGATTTACGTCACACTTGGGCA
AGCTGGCATATCCAACGCGGAACACCGCTAATGGTACTCAAAGAGTTAGGCGGATGGGAAACGATAGAAATGGTTCAGAA
GTATGCACACCTAAATGCCGACCATTTATTGTCATACGTGAATCAAGTCAAATTCTCGTCAAACACTCGCCTTGCTAGGT
AA

Upstream 100 bases:

>100_bases
TACCACACCAAGCGGCGAGCGAGTTCGATGCAGTAGTAAAACAACTGACAAAAAATTAGCTCAACATCTCCACGATAAGC
TCAAGCACGAAGCATGGCAA

Downstream 100 bases:

>100_bases
AGCAGAATAGCAGAAAACGACAAACTGGATGATTATCCAGAAACAAAAAGTACGTAAGTTATTAATTCTAAAGAGAAAAC
TTACAATACTTAGAAAACTC

Product: hypothetical protein

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MEQLNKKPEKTVEQALILLLKDAEHKKDKLTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGKILSPATQNRYR
SSIMRAINLAKQAGWIDVVPYIAKNSEPKKRIRWITEKEAERLLDSLNLNWMKDVCQFALLTGARMTEILSMTWDKINFA
NKMAIVTGDIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWA
SWHIQRGTPLMVLKELGGWETIEMVQKYAHLNADHLLSYVNQVKFSSNTRLAR

Sequences:

>Translated_293_residues
MEQLNKKPEKTVEQALILLLKDAEHKKDKLTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGKILSPATQNRYR
SSIMRAINLAKQAGWIDVVPYIAKNSEPKKRIRWITEKEAERLLDSLNLNWMKDVCQFALLTGARMTEILSMTWDKINFA
NKMAIVTGDIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWA
SWHIQRGTPLMVLKELGGWETIEMVQKYAHLNADHLLSYVNQVKFSSNTRLAR
>Mature_293_residues
MEQLNKKPEKTVEQALILLLKDAEHKKDKLTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGKILSPATQNRYR
SSIMRAINLAKQAGWIDVVPYIAKNSEPKKRIRWITEKEAERLLDSLNLNWMKDVCQFALLTGARMTEILSMTWDKINFA
NKMAIVTGDIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWA
SWHIQRGTPLMVLKELGGWETIEMVQKYAHLNADHLLSYVNQVKFSSNTRLAR

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=319, Percent_Identity=31.0344827586207, Blast_Score=151, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33949; Mature: 33949

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLNKKPEKTVEQALILLLKDAEHKKDKLTKIQHAKYWRDEIGNKLLSSLTSEDIQNAI
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PTHVVRTGKILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAKNSEPKKRIRWITEKEA
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
ERLLDSLNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKSGRGRSLP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCC
LSDDAINLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWA
CCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SWHIQRGTPLMVLKELGGWETIEMVQKYAHLNADHLLSYVNQVKFSSNTRLAR
HHEECCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEQLNKKPEKTVEQALILLLKDAEHKKDKLTKIQHAKYWRDEIGNKLLSSLTSEDIQNAI
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PTHVVRTGKILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAKNSEPKKRIRWITEKEA
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
ERLLDSLNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKSGRGRSLP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCCC
LSDDAINLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWA
CCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SWHIQRGTPLMVLKELGGWETIEMVQKYAHLNADHLLSYVNQVKFSSNTRLAR
HHEECCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]