Click here to switch to the map view.

The map label for this gene is yfhQ [C]

Identifier: 148827519

GI number: 148827519

Start: 878993

End: 879718

Strand: Reverse

Name: yfhQ [C]

Synonym: CGSHiGG_04710

Alternate gene names: 148827519

Gene position: 879718-878993 (Counterclockwise)

Preceding gene: 148827520

Following gene: 148827518

Centisome position: 46.62

GC content: 35.12

Gene sequence:

>726_bases
ATGTTGGAAAATATTCGTATCGTTTTAATTGAAACTTCGCACAGTGGTAATATTGGTTCTGCGGCTAGAGCAATGAAAAC
GATGGGATTGACCCAGCTTTGTCTTGTTTCACCTAAATCTGTTGATGAACAATCTTATGCCCTTTCAGCTGGCGCAGAAA
ATATTGTAAAAAATGCTAGGGTTGTCGATAGTTTTGATGAAGCCGTCGATGATTGCTCTTTGGTAATTGGAACAAGTGCT
CGCTTACGTCATTTACAAAATACATTGATCGAGCCTCGAGAATGCGCGGAGAAAGTTGTAGCGTATAAAGGCAAGATAGC
TATTGTGTTTGGTCGTGAGCGTATTGGATTAACCAATGAAGAACTGCTGAAATGTCATTATCACTTGAATATTCCAGCGA
ATCCTGATTATTCTTCTTTAAATTTAGCAATGGCTGTGCAACTGGTAAGTTATGAATTGCGTATGGCTTTCTTAGTTCAA
AATAATAAGAAAAATTCACTTTCTTTAATAGAGAAAAACTATCCAACAACCGATCAGTTAGCTTATTTTTTTGACTACAC
AGAACGTATATATCAGTCTCTTGGATTTATTCAAAATCAAGGAGTTATGCGTAAATTAAAGCGTTTATACTATCGTGCAA
AATTAGAGAAAAACGAATTAAATATTTTAAATGGCATGCTAAGTGCGGTTGAAAAACGAATTGATTTAACAAAAGAGGAT
AATTGA

Upstream 100 bases:

>100_bases
TCATCTCTAATATTTTAAGTTTCTTTAATTTGCTTAAATTCTTGACTATTTTTAGTGGTTATTGTGGTAGAATACCCTTA
AATTTTAGTCGGGCATCATT

Downstream 100 bases:

>100_bases
CTAAATTAGTCAGATATGTAAGTATTGTGCAATTAATTTTTAGGGATTCTTTATGAAACTTACATCGAAAGGTCGTTATG
CAGTTACAGCCGTTTTAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSA
RLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQ
NNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
N

Sequences:

>Translated_241_residues
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSA
RLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQ
NNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
N
>Mature_241_residues
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSA
RLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQ
NNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
N

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family

Homologues:

Organism=Escherichia coli, GI1788881, Length=239, Percent_Identity=53.9748953974895, Blast_Score=260, Evalue=6e-71,
Organism=Escherichia coli, GI1790865, Length=165, Percent_Identity=35.7575757575758, Blast_Score=98, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y380_HAEIN (P44676)

Other databases:

- EMBL:   L42023
- EMBL:   AF174385
- PIR:   G64150
- RefSeq:   NP_438541.1
- PDB:   3ILK
- PDBsum:   3ILK
- ProteinModelPortal:   P44676
- GeneID:   949482
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0380
- TIGR:   HI_0380
- HOGENOM:   HBG724367
- OMA:   NPEYPVL
- ProtClustDB:   CLSK870049
- BioCyc:   HINF71421:HI_0380-MONOMER
- InterPro:   IPR004384
- InterPro:   IPR001537
- PIRSF:   PIRSF004808
- TIGRFAMs:   TIGR00050

Pfam domain/function: PF00588 SpoU_methylase

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27242; Mature: 27242

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNAR
CCCCEEEEEEEECCCCCCHHHHHHHHHHCHHHHEEECCCCCCCHHHHHHCCHHHHHHHHH
VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE
HHHHHHHHHHHHHEEECCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHH
ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTDQL
HHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHCCCCCCHHHH
AYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
N
C
>Mature Secondary Structure
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNAR
CCCCEEEEEEEECCCCCCHHHHHHHHHHCHHHHEEECCCCCCCHHHHHHCCHHHHHHHHH
VVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE
HHHHHHHHHHHHHEEECCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHH
ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTDQL
HHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHCCCCCCHHHH
AYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800