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The map label for this gene is rdgC

Identifier: 148827460

GI number: 148827460

Start: 818450

End: 819358

Strand: Reverse

Name: rdgC

Synonym: CGSHiGG_04345

Alternate gene names: 148827460

Gene position: 819358-818450 (Counterclockwise)

Preceding gene: 148827465

Following gene: 148827453

Centisome position: 43.42

GC content: 37.29

Gene sequence:

>909_bases
ATGTGGTTCAAAAATTTAATGACTTATAGACTGACTAAACCGCTAGATTGGGATCTTGCACAGCTACAAACTCAACTGGA
AGATTGTCAATTCCATCCTTGCGGCACTCAAGATCAAAGTAAATTTGGCTGGTCTGCTCCATTACGAGGAAGTGATTTAC
TCTATTTTTCTGTTGGAAAACAAATTCTATTAATCGCCAAAAAAGAAGAAAAAATCTTGCCGGCAAATGTGGTCAAACGT
GAATTAGATGACCGCATTGAAAGCCTTGAACAAAAAGAAAATCGCAAACTTAAAAAGGTAGAAAAACAAACATTAAAAGA
TGATGTCGTGATGAATTTATTACCTCGTGCATTTAGTAAAAATCAGCATACGGCACTATGGATTGATACGGAAAATAATC
TTATTCATATTGATGCCGCATCAAGTAAACGCGCGGAAGATGCGCTCGCATTACTGCGTAAATCCTTAGGTTCGCTCCCT
GTCGTGCCTTTAGCCTTTGCTAATGAACCTAGCACGATTTTAACCAATTGGATCCTTCAAGATAATTTGCCGCATTGGTT
ACTTGCATTAGAAGAAGCCGAGCTTCGTGGCAGTCAGGAAGACAGCGTTATCCGTTGCAAAAAACAACCTTTAGAAAATG
AAGAAATTCTCGCTCTTCTGCAAGATGGCAAAAAAGTAGTAAGTAAATTAGCCTTAGAATGGGAAGATACCTTAACTTTC
GTTTTTAACGAAGATTGCACAATCAAACGTTTAAAATTTGCAGATACTGTACGGGAAAAAAATGATGATATTCTGAAAGA
AGATTTTGCACAGCGTTTCGATGCAGATTTTGTACTGATGACTGGTATTTTAGCCAAACTCACCGAAAATTTATTAGATG
AATTTGGTGGCGAAAAAGCGAGATTATAA

Upstream 100 bases:

>100_bases
CCGCCACCAATAAAGGCAATCAATTTGTGTTGCATCGTTTTTCCTACTTTTATGGGCTATAATACCGCACATTCTACCCT
ATATTGAAGGAAGTGTTACG

Downstream 100 bases:

>100_bases
AATCGCGCTTTAATCATTCTAAAATGAAGTTTATTTTTACAATGTGAATCTAATATTCAGCGTATTCAAACCAGCTCTCT
AAAATTAAACAAGCTGACAC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MWFKNLMTYRLTKPLDWDLAQLQTQLEDCQFHPCGTQDQSKFGWSAPLRGSDLLYFSVGKQILLIAKKEEKILPANVVKR
ELDDRIESLEQKENRKLKKVEKQTLKDDVVMNLLPRAFSKNQHTALWIDTENNLIHIDAASSKRAEDALALLRKSLGSLP
VVPLAFANEPSTILTNWILQDNLPHWLLALEEAELRGSQEDSVIRCKKQPLENEEILALLQDGKKVVSKLALEWEDTLTF
VFNEDCTIKRLKFADTVREKNDDILKEDFAQRFDADFVLMTGILAKLTENLLDEFGGEKARL

Sequences:

>Translated_302_residues
MWFKNLMTYRLTKPLDWDLAQLQTQLEDCQFHPCGTQDQSKFGWSAPLRGSDLLYFSVGKQILLIAKKEEKILPANVVKR
ELDDRIESLEQKENRKLKKVEKQTLKDDVVMNLLPRAFSKNQHTALWIDTENNLIHIDAASSKRAEDALALLRKSLGSLP
VVPLAFANEPSTILTNWILQDNLPHWLLALEEAELRGSQEDSVIRCKKQPLENEEILALLQDGKKVVSKLALEWEDTLTF
VFNEDCTIKRLKFADTVREKNDDILKEDFAQRFDADFVLMTGILAKLTENLLDEFGGEKARL
>Mature_302_residues
MWFKNLMTYRLTKPLDWDLAQLQTQLEDCQFHPCGTQDQSKFGWSAPLRGSDLLYFSVGKQILLIAKKEEKILPANVVKR
ELDDRIESLEQKENRKLKKVEKQTLKDDVVMNLLPRAFSKNQHTALWIDTENNLIHIDAASSKRAEDALALLRKSLGSLP
VVPLAFANEPSTILTNWILQDNLPHWLLALEEAELRGSQEDSVIRCKKQPLENEEILALLQDGKKVVSKLALEWEDTLTF
VFNEDCTIKRLKFADTVREKNDDILKEDFAQRFDADFVLMTGILAKLTENLLDEFGGEKARL

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=303, Percent_Identity=51.4851485148515, Blast_Score=300, Evalue=6e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_HAEIG (A5UGC4)

Other databases:

- EMBL:   CP000672
- RefSeq:   YP_001292213.1
- ProteinModelPortal:   A5UGC4
- SMR:   A5UGC4
- STRING:   A5UGC4
- GeneID:   5227326
- GenomeReviews:   CP000672_GR
- KEGG:   hiq:CGSHiGG_04345
- eggNOG:   COG2974
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- ProtClustDB:   PRK00321
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34706; Mature: 34706

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFKNLMTYRLTKPLDWDLAQLQTQLEDCQFHPCGTQDQSKFGWSAPLRGSDLLYFSVGK
CCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
QILLIAKKEEKILPANVVKRELDDRIESLEQKENRKLKKVEKQTLKDDVVMNLLPRAFSK
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NQHTALWIDTENNLIHIDAASSKRAEDALALLRKSLGSLPVVPLAFANEPSTILTNWILQ
CCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
DNLPHWLLALEEAELRGSQEDSVIRCKKQPLENEEILALLQDGKKVVSKLALEWEDTLTF
CCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
VFNEDCTIKRLKFADTVREKNDDILKEDFAQRFDADFVLMTGILAKLTENLLDEFGGEKA
EECCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
RL
CC
>Mature Secondary Structure
MWFKNLMTYRLTKPLDWDLAQLQTQLEDCQFHPCGTQDQSKFGWSAPLRGSDLLYFSVGK
CCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
QILLIAKKEEKILPANVVKRELDDRIESLEQKENRKLKKVEKQTLKDDVVMNLLPRAFSK
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NQHTALWIDTENNLIHIDAASSKRAEDALALLRKSLGSLPVVPLAFANEPSTILTNWILQ
CCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
DNLPHWLLALEEAELRGSQEDSVIRCKKQPLENEEILALLQDGKKVVSKLALEWEDTLTF
CCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
VFNEDCTIKRLKFADTVREKNDDILKEDFAQRFDADFVLMTGILAKLTENLLDEFGGEKA
EECCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
RL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA