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The map label for this gene is rarD [C]

Identifier: 148827364

GI number: 148827364

Start: 709282

End: 710172

Strand: Reverse

Name: rarD [C]

Synonym: CGSHiGG_03745

Alternate gene names: 148827364

Gene position: 710172-709282 (Counterclockwise)

Preceding gene: 148827366

Following gene: 148827361

Centisome position: 37.63

GC content: 36.92

Gene sequence:

>891_bases
ATGAAAGTAGTCATTCAAGGCGTATTATTGTGCATTTTTTCACAATGTTTATTTGGCATATTGTATTTATTTAGTATATG
GCTCCAACCACTTAGCGGAACGGATGTTTTTGCGTGGCGTATGCTGACCATGATCTTTGGGTTACTTTTAATTTTATTCC
CGACTATTGGTTGCCGCTCTCTTTTGTCTCTAATCACGATAACTTTAGGAAAAAGTTGGACGCGTTGGGTTTTATTTTTA
CTGGGGACATTAGATGCGGGAAGTCAATTCTGGCTCTTTATGTGGGCGCCGCTAAATGGCGAAGGGATAAATATTGCGAT
GGGATATTTTCTTTTTCCGCTGATTATGGCTGTTTTAGGATGGGCTTGGTTAAAAGAATGCTTATCATTTATTCAGAAAA
TCGCGCTTTTACTGGCTGCCTGCGGTGTTGCACATGAATTATGGCACACTCAAAGTTTTTCATGGACAAGTTTGTGGGTT
TGTACGGTTTATCCATTTTATTATCTAAGCCGTAAATTGATGAAAATCCCTGCTCTACAAGGAATTACATTGGATATTAT
TTTAATTTCGATTCCTTGTTTTATTTATATTCTTTCTCAAAGCGATACGCTTTCTTTGGTTACGCAAGAATATCGTTATT
GGTTATTGCTACCAGCACTTGGTATTGTGAGTGCGATTTCGCTTTCAGCCAACTTAAAATCCAGCCAACAAATTCCAGTT
AGTATTTTTGCGGTGTTGAGTTATATTGAACCCATATTGCTTTTTTTAATAGCTGTCTTTGTGCTAGATAATCAAATAAC
CACAAGCGACTATTTTACTTATGTGCCTATTTGGTTAAGTCTCATTGTGATTGGCATAGAAGGGCTTTTAAACAAAAATA
AAGTGCGGTGA

Upstream 100 bases:

>100_bases
GTAACCATTGAGAAAAATATTATCACAATAAAAAATAAAGTTGAGATTTTTTATTGCCTTGGGATTTTATAATAATCACA
TTGATGAGATGAGGTTCAAA

Downstream 100 bases:

>100_bases
AAATTAACCGCACTTATTAAAGTTACTGAAATAATTAGAAAGTATCTGAAAAAGTGATTTTTTATTCCCACTCGATTGTT
GCGGGTGGTTTTCCGCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MKVVIQGVLLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTIGCRSLLSLITITLGKSWTRWVLFL
LGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIMAVLGWAWLKECLSFIQKIALLLAACGVAHELWHTQSFSWTSLWV
CTVYPFYYLSRKLMKIPALQGITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQQIPV
SIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKNKVR

Sequences:

>Translated_296_residues
MKVVIQGVLLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTIGCRSLLSLITITLGKSWTRWVLFL
LGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIMAVLGWAWLKECLSFIQKIALLLAACGVAHELWHTQSFSWTSLWV
CTVYPFYYLSRKLMKIPALQGITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQQIPV
SIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKNKVR
>Mature_296_residues
MKVVIQGVLLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTIGCRSLLSLITITLGKSWTRWVLFL
LGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIMAVLGWAWLKECLSFIQKIALLLAACGVAHELWHTQSFSWTSLWV
CTVYPFYYLSRKLMKIPALQGITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQQIPV
SIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKNKVR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=210, Percent_Identity=27.6190476190476, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33549; Mature: 33549

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVVIQGVLLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTIGCRS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSLITITLGKSWTRWVLFLLGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIMAVLG
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
WAWLKECLSFIQKIALLLAACGVAHELWHTQSFSWTSLWVCTVYPFYYLSRKLMKIPALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
GITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQQIPV
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
SIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKNKVR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKVVIQGVLLCIFSQCLFGILYLFSIWLQPLSGTDVFAWRMLTMIFGLLLILFPTIGCRS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSLITITLGKSWTRWVLFLLGTLDAGSQFWLFMWAPLNGEGINIAMGYFLFPLIMAVLG
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
WAWLKECLSFIQKIALLLAACGVAHELWHTQSFSWTSLWVCTVYPFYYLSRKLMKIPALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
GITLDIILISIPCFIYILSQSDTLSLVTQEYRYWLLLPALGIVSAISLSANLKSSQQIPV
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
SIFAVLSYIEPILLFLIAVFVLDNQITTSDYFTYVPIWLSLIVIGIEGLLNKNKVR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]