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The map label for this gene is yjcD [C]

Identifier: 148827270

GI number: 148827270

Start: 597458

End: 598774

Strand: Direct

Name: yjcD [C]

Synonym: CGSHiGG_03220

Alternate gene names: 148827270

Gene position: 597458-598774 (Clockwise)

Preceding gene: 148827267

Following gene: 148827274

Centisome position: 31.66

GC content: 41.08

Gene sequence:

>1317_bases
ATGCCAACTTTAGAAAAAACATTTGAACTCAAACAACGTGGTTCAACTGTTCGTCAAGAAATTATCGCGGGTTTAACCAC
GTTCTTAGCAATGGTTTATTCTGTCATCGTGGTACCCAATATGCTGGGTGCTGCAGGTTTTCCTGCGGAATCTGTCTTTA
TTGCCACCTGTTTAGTTGCAGGATTAGGCTCTATCTTAATCGGCTTATGGGCAAATGCACCAATGGCAATTGGTTGTGCA
ATTTCTCTTACTGCTTTTACAGCATTTAGCTTAGTGATTGGTCAAAAGGTCGCCATTCCCGTTGCACTAGGCGCAGTATT
CTTAATGGGGGTTGTGTTTACCTTAATTTCTACCACAGGTATCCGAGCATGGATCTTGCGTAATTTACCATCCAATATCG
CTCATGGAGCAGGCATTGGTATCGGACTCTTTTTACTTTTAATTGCCGCAAACGGTGTTGGTTTAGTCGTCAGCAACCAA
GCTGGCTTACCAGTAAAATTAGGCGATTTCACTTCATTCCCAGTCATGATGTCCTTAATTGGTTTAGCGCTCATTATCGG
CCTTGAAAAAATGAAAATTAAAGGCGGCATTTTATGGGTAATTATCGCTATTACTATCGTAGGTTTAATTTTTGATCCAA
ATGTAAAATTTGGCGGAGAGATTTTCAAAATGCCAACCTTTGGTGAAAATTCTCTCTTCTTACAATTAGACTTTATGGGC
GCACTACAACCTGCAATCTTGCCTGTGGTATTTGCTTTGGTGATGACTGCCGTATTTGATGCAACGGGAACTATTCGCGC
AGTTGCAGGTCAAGCAGACTTGCTTTATAAGGATGGTCAAATTATCAATGGCGGTAAAGCCTTAACTTCAGATTCAATCA
GTAGCTTATTCTCAGGTTTATTCGGTACAGCACCAGCTGCCGTTTATATTGAGTCTGCAGCAGGGACAGCAGCAGGCGGT
AAAACAGGTATTACTGCTATCGTTGTTGGTGTGTTATTCCTATTAATGCTTTTCTTCCAACCATTAGCTTTCTTAGTACC
AGGCTACGCAACTGCTCCAGCATTAATGTATGTTGGTTTATTAATGTTAAGCAATGTAAGCAAATTAGATTTCGATGATT
TCGTTGGCGCGATGAGCGGATTAATCTGCGCAGTGTTTATCGTACTTACCGCTAACATCGTAACAGGCATTATGTTAGGT
TTTGCGGCATTAGTAATTGGAAGAATAGTGAGTGGCGATATTAAACGCTTAAATGTAGGTACTGTGATTATTGCAATCGT
ACTTGTTGCATTCTATGCAGGCGGTTGGGCGATTTAG

Upstream 100 bases:

>100_bases
ATCCTAAATAAAACTCACGCAAACGTTTACTTCTCATTTTTATGATGTAAAATAGCGCACCTTATTACTTCCAATTTTTT
ACTTAACTTCAAGGAACACT

Downstream 100 bases:

>100_bases
TAACAGAAATAAGAAAAGGGAAAAGCCTTCCCCTTAATTTTAATCACAAAAGTGCGGTGAAATTTTACCGCACTTTTTTA
TACTTGGATTACTCTTTCTT

Product: cystathionine beta-lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MPTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVAGLGSILIGLWANAPMAIGCA
ISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQ
AGLPVKLGDFTSFPVMMSLIGLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMG
ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLYKDGQIINGGKALTSDSISSLFSGLFGTAPAAVYIESAAGTAAGG
KTGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLG
FAALVIGRIVSGDIKRLNVGTVIIAIVLVAFYAGGWAI

Sequences:

>Translated_438_residues
MPTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVAGLGSILIGLWANAPMAIGCA
ISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQ
AGLPVKLGDFTSFPVMMSLIGLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMG
ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLYKDGQIINGGKALTSDSISSLFSGLFGTAPAAVYIESAAGTAAGG
KTGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLG
FAALVIGRIVSGDIKRLNVGTVIIAIVLVAFYAGGWAI
>Mature_437_residues
PTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVAGLGSILIGLWANAPMAIGCAI
SLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQA
GLPVKLGDFTSFPVMMSLIGLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMGA
LQPAILPVVFALVMTAVFDATGTIRAVAGQADLLYKDGQIINGGKALTSDSISSLFSGLFGTAPAAVYIESAAGTAAGGK
TGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLGF
AALVIGRIVSGDIKRLNVGTVIIAIVLVAFYAGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=440, Percent_Identity=75.9090909090909, Blast_Score=649, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=439, Percent_Identity=75.626423690205, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI87082309, Length=423, Percent_Identity=38.7706855791962, Blast_Score=278, Evalue=4e-76,
Organism=Escherichia coli, GI1790150, Length=426, Percent_Identity=36.150234741784, Blast_Score=248, Evalue=8e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 45347; Mature: 45216

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVA
CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GLGSILIGLWANAPMAIGCAISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
IRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQAGLPVKLGDFTSFPVMMSLI
HHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCHHHHHHHH
GLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMG
HHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEECHH
ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLYKDGQIINGGKALTSDSISSLFSGL
CCHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCEEEECCEEECCCCCCCHHHHHHHHHHH
FGTAPAAVYIESAAGTAAGGKTGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGL
HCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLGFAALVIGRIVSGDIKRLNVG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TVIIAIVLVAFYAGGWAI
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVA
CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GLGSILIGLWANAPMAIGCAISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLISTTG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
IRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQAGLPVKLGDFTSFPVMMSLI
HHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCHHHHHHHH
GLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDFMG
HHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEECHH
ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLYKDGQIINGGKALTSDSISSLFSGL
CCHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCEEEECCEEECCCCCCCHHHHHHHHHHH
FGTAPAAVYIESAAGTAAGGKTGITAIVVGVLFLLMLFFQPLAFLVPGYATAPALMYVGL
HCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLGFAALVIGRIVSGDIKRLNVG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TVIIAIVLVAFYAGGWAI
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]