| Definition | Haemophilus influenzae PittGG chromosome, complete genome. |
|---|---|
| Accession | NC_009567 |
| Length | 1,887,192 |
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The map label for this gene is yddA [C]
Identifier: 148827192
GI number: 148827192
Start: 491018
End: 492796
Strand: Direct
Name: yddA [C]
Synonym: CGSHiGG_02675
Alternate gene names: 148827192
Gene position: 491018-492796 (Clockwise)
Preceding gene: 148827172
Following gene: 148827193
Centisome position: 26.02
GC content: 37.32
Gene sequence:
>1779_bases ATGGATTACAGCCAAGAAGCCATTACTTCTCTTATTTGGATTTTACAAACGCTAGCCATCACCTCAGTCGTCTTTAGTTT TGGCATTTTTCTTTTGGTGCGTTTTACCCAATGGGGAAAACAATTTTGGATGTTTGCAGGCGGTTATCTTTCGCCTAAAC GTAGCATTAAACCTATCTTATTCTTTCTGCTTATTGTTGCAATGACATTACTTAGCGTACGTATCAGCCTTGTAAATTCT GAGTGGTATAAAAATATGTATACCTCATTGCAAGAATTTAATGAACATGTATTTTGGCAACAAATGGGCTTATTCTGCGT CATCGCAGCAAGTTCTGTTTCAGCAGCATTAGTAAGCTATTATTTAGAGCAACGTTTCGTCATCAACTGGATTGAATGGC TTAACGAACAGCTTGTTAATAAATGGATGGCACATCGCGCCTATTACAAAACACAGTATTTATCAGAAAATCTTGATAAC CCCGATCAACGTATTCAACAAGATGTGCAATCTTATGTAAAAACCACGCTTTCTTTAAGCACTGGCGTCATTGATGCGGT CACCTCGATGATTTCTTACACGATTTTGTTATGGGGATTAGCCGGTCCAATGATAGTGCTTGGTGTAGAAATTCCGCATA TGATGGTATTTTTAGTGTTTGGTTATGTCATTTTCACAACCCTCATCGCATTCTGGCTCGGTCGCCCATTAATCTCATTG AATTTTATTAATGAACGCCTAAACGCAAACTATCGTTATTCTTTAATTCGCATTAAAGAATATGCTGAAAGCATTGCTTT TTATGCAGGCGAAAAAGTCGAAAAAAATCAGCTTTATCAGCAGTTCAACGCCGTCATTCACAATATGTGGGTCATTATAT TTAGAACACTAAAATTTTCAGGATTTAACCTAGTCGTAAGCCAAATTTCTGTTGTTTTTCCATTGTTAATTCAAGTTGGA CGTTACTTTGAAAAGCAAATAAAACTAGGCGATCTAATGCAAACCTTGCAAGTATTTGGTCAGTTACACGCAAATCTTTC ATTCTTCCGCAGTACTTATGATAATTTTGCAAGCTATAAAGCAACGCTAGATCGTTTAACTGGGTTCTGTTATGCCATTG AAAAAGCAAATAATAAATCACAAACACAGATCCACAATCATCCAACAGATGTGATTTTCAAAAATTTAAGTATTCAAAAT CCATTAGGTCATACACTAATTAAACATCTAAACATTACCTTACCGCAAGGAACAAGTTTGCTTATTCAAGGAAAATCTGG AGCAGGAAAAACCACGCTTTTACGCACCATTGCGGGGCTTTGGAGCCATGCCGAGGGGGAAATAAATTGCCCTACGCACA ATCAGCTTTTCTTGTCACAAAAGCCCTATGTGCCACAAGGAAATTTAATGTCAGCATTAGCTTATCCAAATAACGCTGAC AATATTTCACATACACAAGCTGTAGAAATATTAAATAAAGTACAACTAGGACATTTGGCTGAACAATTAGAAAAAGAACA AGACTGGACACGTATTCTTTCTCTTGGCGAACAACAGCGTTTGGCGTTTGCACGATTAATTCTACACAAACCAGCGGTGG CATTTTTAGATGAAGCCACAGCTAGTATGGATGAAGGTTTAGAATTTTCGATGTATCAATTGTTACAACAAGAACTACCA CAAACGACAATCATCAGTGTGGGACACCGTTCAACCCTTAAAACCTTACATCAACAACAGTTAATTCTGCAAGACAAAGG GCAATGGCAAGTGCTATAA
Upstream 100 bases:
>100_bases TGCGAAATTGAGCATAGCCTCTACAATACCGAAAATTTTTGACCCTTTTACAAAAAGTGCGGTTATTTTTCACCGCACTT TTATCTCGGATGGAATATTT
Downstream 100 bases:
>100_bases AAAACGCTAAAAAACACTGTAATCGCAACGCTTTTTTTGATACATTTAGTGCAATTTTTTGTATGTTTGACAAAGTCATT TTCTACTTTTTGTCAAACAA
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 592; Mature: 592
Protein sequence:
>592_residues MDYSQEAITSLIWILQTLAITSVVFSFGIFLLVRFTQWGKQFWMFAGGYLSPKRSIKPILFFLLIVAMTLLSVRISLVNS EWYKNMYTSLQEFNEHVFWQQMGLFCVIAASSVSAALVSYYLEQRFVINWIEWLNEQLVNKWMAHRAYYKTQYLSENLDN PDQRIQQDVQSYVKTTLSLSTGVIDAVTSMISYTILLWGLAGPMIVLGVEIPHMMVFLVFGYVIFTTLIAFWLGRPLISL NFINERLNANYRYSLIRIKEYAESIAFYAGEKVEKNQLYQQFNAVIHNMWVIIFRTLKFSGFNLVVSQISVVFPLLIQVG RYFEKQIKLGDLMQTLQVFGQLHANLSFFRSTYDNFASYKATLDRLTGFCYAIEKANNKSQTQIHNHPTDVIFKNLSIQN PLGHTLIKHLNITLPQGTSLLIQGKSGAGKTTLLRTIAGLWSHAEGEINCPTHNQLFLSQKPYVPQGNLMSALAYPNNAD NISHTQAVEILNKVQLGHLAEQLEKEQDWTRILSLGEQQRLAFARLILHKPAVAFLDEATASMDEGLEFSMYQLLQQELP QTTIISVGHRSTLKTLHQQQLILQDKGQWQVL
Sequences:
>Translated_592_residues MDYSQEAITSLIWILQTLAITSVVFSFGIFLLVRFTQWGKQFWMFAGGYLSPKRSIKPILFFLLIVAMTLLSVRISLVNS EWYKNMYTSLQEFNEHVFWQQMGLFCVIAASSVSAALVSYYLEQRFVINWIEWLNEQLVNKWMAHRAYYKTQYLSENLDN PDQRIQQDVQSYVKTTLSLSTGVIDAVTSMISYTILLWGLAGPMIVLGVEIPHMMVFLVFGYVIFTTLIAFWLGRPLISL NFINERLNANYRYSLIRIKEYAESIAFYAGEKVEKNQLYQQFNAVIHNMWVIIFRTLKFSGFNLVVSQISVVFPLLIQVG RYFEKQIKLGDLMQTLQVFGQLHANLSFFRSTYDNFASYKATLDRLTGFCYAIEKANNKSQTQIHNHPTDVIFKNLSIQN PLGHTLIKHLNITLPQGTSLLIQGKSGAGKTTLLRTIAGLWSHAEGEINCPTHNQLFLSQKPYVPQGNLMSALAYPNNAD NISHTQAVEILNKVQLGHLAEQLEKEQDWTRILSLGEQQRLAFARLILHKPAVAFLDEATASMDEGLEFSMYQLLQQELP QTTIISVGHRSTLKTLHQQQLILQDKGQWQVL >Mature_592_residues MDYSQEAITSLIWILQTLAITSVVFSFGIFLLVRFTQWGKQFWMFAGGYLSPKRSIKPILFFLLIVAMTLLSVRISLVNS EWYKNMYTSLQEFNEHVFWQQMGLFCVIAASSVSAALVSYYLEQRFVINWIEWLNEQLVNKWMAHRAYYKTQYLSENLDN PDQRIQQDVQSYVKTTLSLSTGVIDAVTSMISYTILLWGLAGPMIVLGVEIPHMMVFLVFGYVIFTTLIAFWLGRPLISL NFINERLNANYRYSLIRIKEYAESIAFYAGEKVEKNQLYQQFNAVIHNMWVIIFRTLKFSGFNLVVSQISVVFPLLIQVG RYFEKQIKLGDLMQTLQVFGQLHANLSFFRSTYDNFASYKATLDRLTGFCYAIEKANNKSQTQIHNHPTDVIFKNLSIQN PLGHTLIKHLNITLPQGTSLLIQGKSGAGKTTLLRTIAGLWSHAEGEINCPTHNQLFLSQKPYVPQGNLMSALAYPNNAD NISHTQAVEILNKVQLGHLAEQLEKEQDWTRILSLGEQQRLAFARLILHKPAVAFLDEATASMDEGLEFSMYQLLQQELP QTTIISVGHRSTLKTLHQQQLILQDKGQWQVL
Specific function: Unknown
COG id: COG4178
COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI4826958, Length=517, Percent_Identity=28.2398452611219, Blast_Score=180, Evalue=3e-45, Organism=Homo sapiens, GI4506341, Length=504, Percent_Identity=25.7936507936508, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI9945308, Length=545, Percent_Identity=24.4036697247706, Blast_Score=149, Evalue=1e-35, Organism=Homo sapiens, GI7262393, Length=221, Percent_Identity=30.316742081448, Blast_Score=116, Evalue=5e-26, Organism=Homo sapiens, GI134142342, Length=202, Percent_Identity=26.7326732673267, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI134142340, Length=202, Percent_Identity=26.7326732673267, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI9955963, Length=300, Percent_Identity=25.6666666666667, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI134142345, Length=202, Percent_Identity=26.7326732673267, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI134142337, Length=202, Percent_Identity=26.7326732673267, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI171184400, Length=217, Percent_Identity=26.7281105990783, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI21536378, Length=195, Percent_Identity=24.6153846153846, Blast_Score=70, Evalue=7e-12, Organism=Escherichia coli, GI1787772, Length=509, Percent_Identity=32.4165029469548, Blast_Score=250, Evalue=2e-67, Organism=Escherichia coli, GI1787112, Length=200, Percent_Identity=33.5, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786575, Length=332, Percent_Identity=21.6867469879518, Blast_Score=76, Evalue=7e-15, Organism=Escherichia coli, GI1786654, Length=209, Percent_Identity=28.2296650717703, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI87081709, Length=176, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17532409, Length=535, Percent_Identity=27.8504672897196, Blast_Score=187, Evalue=1e-47, Organism=Caenorhabditis elegans, GI17532411, Length=531, Percent_Identity=27.3069679849341, Blast_Score=184, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17564250, Length=555, Percent_Identity=27.027027027027, Blast_Score=158, Evalue=1e-38, Organism=Caenorhabditis elegans, GI72000520, Length=527, Percent_Identity=26.5654648956357, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17558960, Length=211, Percent_Identity=38.8625592417062, Blast_Score=142, Evalue=6e-34, Organism=Caenorhabditis elegans, GI17542146, Length=521, Percent_Identity=24.5681381957774, Blast_Score=137, Evalue=2e-32, Organism=Caenorhabditis elegans, GI72000518, Length=184, Percent_Identity=42.3913043478261, Blast_Score=134, Evalue=1e-31, Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=25.462962962963, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71984940, Length=216, Percent_Identity=27.3148148148148, Blast_Score=69, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17565938, Length=220, Percent_Identity=23.1818181818182, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6325110, Length=235, Percent_Identity=33.6170212765957, Blast_Score=108, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6324985, Length=350, Percent_Identity=24.2857142857143, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24643394, Length=519, Percent_Identity=25.2408477842004, Blast_Score=148, Evalue=8e-36, Organism=Drosophila melanogaster, GI24638558, Length=536, Percent_Identity=24.6268656716418, Blast_Score=136, Evalue=5e-32, Organism=Drosophila melanogaster, GI24638550, Length=539, Percent_Identity=24.6753246753247, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24638552, Length=539, Percent_Identity=24.6753246753247, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24638554, Length=539, Percent_Identity=24.6753246753247, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24638546, Length=539, Percent_Identity=24.6753246753247, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24638556, Length=539, Percent_Identity=24.6753246753247, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24638548, Length=539, Percent_Identity=24.6753246753247, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24653245, Length=219, Percent_Identity=26.9406392694064, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI281363262, Length=220, Percent_Identity=26.8181818181818, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI45552341, Length=448, Percent_Identity=22.9910714285714, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI45552359, Length=448, Percent_Identity=22.9910714285714, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI45550972, Length=448, Percent_Identity=22.9910714285714, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI85726357, Length=183, Percent_Identity=27.3224043715847, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI45552347, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI45552337, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI45552351, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552361, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI45552349, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI45552357, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI24583969, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI45552339, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI45552363, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI45552355, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI45552353, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI45552335, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI45552343, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI45552345, Length=357, Percent_Identity=24.0896358543417, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357907, Length=297, Percent_Identity=23.9057239057239, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010509 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR017940 - InterPro: IPR011527 - InterPro: IPR003593 [H]
Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 67879; Mature: 67879
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYSQEAITSLIWILQTLAITSVVFSFGIFLLVRFTQWGKQFWMFAGGYLSPKRSIKPIL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH FFLLIVAMTLLSVRISLVNSEWYKNMYTSLQEFNEHVFWQQMGLFCVIAASSVSAALVSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLEQRFVINWIEWLNEQLVNKWMAHRAYYKTQYLSENLDNPDQRIQQDVQSYVKTTLSLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH TGVIDAVTSMISYTILLWGLAGPMIVLGVEIPHMMVFLVFGYVIFTTLIAFWLGRPLISL HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH NFINERLNANYRYSLIRIKEYAESIAFYAGEKVEKNQLYQQFNAVIHNMWVIIFRTLKFS HHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GFNLVVSQISVVFPLLIQVGRYFEKQIKLGDLMQTLQVFGQLHANLSFFRSTYDNFASYK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATLDRLTGFCYAIEKANNKSQTQIHNHPTDVIFKNLSIQNPLGHTLIKHLNITLPQGTSL HHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEE LIQGKSGAGKTTLLRTIAGLWSHAEGEINCPTHNQLFLSQKPYVPQGNLMSALAYPNNAD EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCC NISHTQAVEILNKVQLGHLAEQLEKEQDWTRILSLGEQQRLAFARLILHKPAVAFLDEAT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHH ASMDEGLEFSMYQLLQQELPQTTIISVGHRSTLKTLHQQQLILQDKGQWQVL HHHHCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEECC >Mature Secondary Structure MDYSQEAITSLIWILQTLAITSVVFSFGIFLLVRFTQWGKQFWMFAGGYLSPKRSIKPIL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH FFLLIVAMTLLSVRISLVNSEWYKNMYTSLQEFNEHVFWQQMGLFCVIAASSVSAALVSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLEQRFVINWIEWLNEQLVNKWMAHRAYYKTQYLSENLDNPDQRIQQDVQSYVKTTLSLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH TGVIDAVTSMISYTILLWGLAGPMIVLGVEIPHMMVFLVFGYVIFTTLIAFWLGRPLISL HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH NFINERLNANYRYSLIRIKEYAESIAFYAGEKVEKNQLYQQFNAVIHNMWVIIFRTLKFS HHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GFNLVVSQISVVFPLLIQVGRYFEKQIKLGDLMQTLQVFGQLHANLSFFRSTYDNFASYK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATLDRLTGFCYAIEKANNKSQTQIHNHPTDVIFKNLSIQNPLGHTLIKHLNITLPQGTSL HHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEE LIQGKSGAGKTTLLRTIAGLWSHAEGEINCPTHNQLFLSQKPYVPQGNLMSALAYPNNAD EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCC NISHTQAVEILNKVQLGHLAEQLEKEQDWTRILSLGEQQRLAFARLILHKPAVAFLDEAT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHH ASMDEGLEFSMYQLLQQELPQTTIISVGHRSTLKTLHQQQLILQDKGQWQVL HHHHCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]